annotate onto-toolkit/README @ 0:4484575e4186

Migrated tool version 0.1 from old tool shed archive to new tool shed repository
author erick-antezana
date Tue, 07 Jun 2011 17:51:45 -0400
parents
children d2d26d330236
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
1 README
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
2 ======
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
3
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
4 ONTO-Toolkit is a collection of Galaxy tools for managing ontologies
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
5 that are represented in the OBO flat file format (spec 1.2).
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
6
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
7 Those tools are basically wrappers around the most commonly used tasks
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
8 provided by the ONTO-PERL suite.
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
9
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
10 See also:
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
11
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
12 ONTO-PERL: An API supporting the development and analysis of bio-ontologies
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
13 Antezana E, Egana M, De Baets B, Kuiper M, Mironov V.
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
14 Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
15
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
16 For installing this collection of tools:
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
17
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
18 see the file INSTALL
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
19
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
20 DEPENDENCIES
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
21 ============
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
22
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
23 ONTO-Toolkit requires:
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
24
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
25 1. Galaxy (latest version is recommended):
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
26
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
27 http://main.g2.bx.psu.edu/
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
28
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
29 2. ONTO-PERL (version >= 1.18):
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
30
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
31 http://search.cpan.org/dist/ONTO-PERL/
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
32
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
33 COPYRIGHT AND LICENCE
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
34 =====================
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
35
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
36 Copyright (c) 2010 Erick Antezana. All rights reserved.
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
37 OONTO-Toolkit is free software; you can redistribute it and/or
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
38 modify it under the same terms as Perl itself.
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
39
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
40 N.B. Galaxy is distributed as open source under the conditions of the
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
erick-antezana
parents:
diff changeset
41 Academic Free License (http://www.opensource.org/licenses/academic.php).