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Migrated tool version 0.1 from old tool shed archive to new tool shed repository
author erick-antezana
date Tue, 07 Jun 2011 17:51:45 -0400
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children d2d26d330236
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<suite id="ONTO-ToolKit" name="Suite of OBO Ontology manipulation tools" version="0.1">
	<description>This suite contains tools for managing ontologies that are represented in the OBO flat file format</description>
	
	<tool id="get_ancestor_terms" name="Get the ancestor terms of a given OBO term" version="1.22">
		<description> Collects the ancestor terms from a given term in the given OBO ontology</description>
	</tool>
	
	<tool id="get_child_terms" name="Get the child terms of a given OBO term" version="1.22">
		<description>Collects the child terms from a given term in the given OBO ontology</description>
	</tool>
	
	<tool id="get_descendent_terms" name="Get the descendent terms of a given OBO term" version="1.22">
		<description>Collects the descendent terms from a given term in the given OBO ontology</description>
	</tool>
	
	<tool id="get_intersection_ontology_from" name="Gets an intersection ontology from given OBO ontologies" version="1.22">
		<description>Provides an intersection of the given ontologies (in OBO format)</description>
	</tool>
	
	<tool id="get_list_intersection_from" name="Get the overlapping terms from a given set OBO terms" version="1.22">
		<description>Collects common OBO terms from a given set of list containing OBO terms</description>
	</tool>
	
	<tool id="get_parent_terms" name="Get the parent terms of a given OBO term" version="1.22">
		<description>Collects the parent terms from a given term in the given OBO ontology</description>
	</tool>
	
	<tool id="get_relationship_types" name="Get all the relationship types in an ontology" version="1.22">
		<description>Collects the relationship types in the given OBO ontology</description>
	</tool>
	
	<tool id="get_subontology_from" name="Get subontology from a given OBO term" version="1.22">
		<description>Extracts a subontology (in OBO format) of a given ontology having as root node the provided term ID</description>
	</tool>
	
	<tool id="obo2owl" name="Convert OBO to OWL" version="1.22">
		<description>Converts an OBO formatted ontology to OWL format</description>
	</tool>
	
	<tool id="obo2rdf" name="Convert OBO to RDF" version="1.22">
		<description>Converts an OBO formatted ontology to RDF/XML format</description>
	</tool>
	
	<tool id="obo2tran" name="Convert OBO to RDF (tc)" version="1.22">
		<description>Converts an OBO formatted ontology to RDF/XML format with transitive closure</description>
	</tool>
	
	<tool id="term_id_vs_term_def" name="Get all the term IDs and term definitions of a given OBO ontology" version="1.22">
		<description>Get all the term IDs and term definitions of a given OBO ontology</description>
	</tool>
	
	<tool id="term_id_vs_term_name" name="Get all the term IDs and term names of a given OBO ontology" version="1.22">
		<description>Get all the term IDs and term names of a given OBO ontology</description>
	</tool>
</suite>