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view qiime2/qiime_phylogeny_midpoint-root.xml @ 0:370e0b6e9826 draft

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author florianbegusch
date Wed, 17 Jul 2019 03:05:17 -0400
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<?xml version="1.0" ?>
<tool id="qiime_phylogeny_midpoint-root" name="qiime phylogeny midpoint-root" version="2019.4">
	<description> - Midpoint root an unrooted phylogenetic tree.</description>
	<requirements>
		<requirement type="package" version="2019.4">qiime2</requirement>
	</requirements>
	<command><![CDATA[
qiime phylogeny midpoint-root

--i-tree=$itree

--o-rooted-tree=orootedtree
;
cp orootedtree.qza $orootedtree
	]]></command>
	<inputs>
		<param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Unrooted] The phylogenetic tree to be rooted.          [required]" name="itree" optional="False" type="data"/>
	</inputs>
	<outputs>
		<data format="qza" label="${tool.name} on ${on_string}: rootedtree.qza" name="orootedtree"/>
	</outputs>
	<help><![CDATA[
Midpoint root an unrooted phylogenetic tree.
############################################

Midpoint root an unrooted phylogenetic tree.

Parameters
----------
tree : Phylogeny[Unrooted]
    The phylogenetic tree to be rooted.

Returns
-------
rooted_tree : Phylogeny[Rooted]
    The rooted phylogenetic tree.
	]]></help>
<macros>
    <import>qiime_citation.xml</import>
</macros>
<expand macro="qiime_citation"/>
</tool>