Mercurial > repos > florianbegusch > qiime2_wrappers
diff qiime2/qiime_deblur_visualize-stats.xml @ 0:51b9b6b57732 draft
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author | florianbegusch |
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date | Thu, 24 May 2018 05:21:07 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2/qiime_deblur_visualize-stats.xml Thu May 24 05:21:07 2018 -0400 @@ -0,0 +1,48 @@ +<?xml version="1.0" ?> +<tool id="qiime_deblur_visualize-stats" name="qiime deblur visualize-stats" version="2018.4"> + <description> - Visualize Deblur stats per sample.</description> + <requirements> + <requirement type="package" version="2018.4">qiime2</requirement> + </requirements> + <command><![CDATA[ + qiime deblur visualize-stats --i-deblur-stats=$ideblurstats + + #if str($cmdconfig) != 'None': + --cmd-config=$cmdconfig + #end if + + --o-visualization=ovisualization; + + qiime tools export ovisualization.qzv --output-dir out && mkdir -p '$ovisualization.files_path' + && cp -r out/* '$ovisualization.files_path' + && mv '$ovisualization.files_path/index.html' '$ovisualization'; + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-deblur-stats: DeblurStats Summary statistics of the Deblur process. [required]" name="ideblurstats" optional="False" type="data"/> + <param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/> + </inputs> + <outputs> + <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/> + </outputs> + <help><![CDATA[ +Visualize Deblur stats per sample. +---------------------------------- + +Display Deblur statistics per sample + +Parameters +---------- +deblur_stats : DeblurStats + Summary statistics of the Deblur process. + +Returns +------- +visualization : Visualization + \ + ]]> + </help> +<macros> + <import>qiime_citation.xml</import> +</macros> +<expand macro="qiime_citation" /> +</tool>