Mercurial > repos > fubar > mashmap
diff seqtk_telo/seqtk_telo.xml @ 1:0183cad9d13b draft
planemo upload
author | fubar |
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date | Thu, 22 Feb 2024 10:48:01 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/seqtk_telo/seqtk_telo.xml Thu Feb 22 10:48:01 2024 +0000 @@ -0,0 +1,32 @@ +<tool name="seqtk_telo" id="seqtk_telo" version="1.4" profile="22.05"> + <!--Source in git at: https://github.com/fubar2/galaxy_tf_overlay--> + <!--Created by toolfactory@galaxy.org at 09/12/2023 14:04:09 using the Galaxy Tool Factory.--> + <description></description> + <requirements> + <requirement version="1.4" type="package">seqtk</requirement> + </requirements> + <version_command><![CDATA[echo "1.4"]]></version_command> + <command><![CDATA[bash $runme]]></command> + <configfiles> + <configfile name="runme"><![CDATA[seqtk telo $infa > $out_bed ]]></configfile> + </configfiles> + <inputs> + <param name="infa" type="data" optional="false" label="Fasta input for telomere finding" help="" format="fasta" multiple="false"/> + </inputs> + <outputs> + <data name="out_bed" format="bed" label="seqtk_telo on $infa.element_identifier" hidden="false"/> + </outputs> + <tests> + <test> + <output name="out_bed" value="out_bed_sample" compare="diff" lines_diff="0"/> + <param name="infa" value="infa_sample"/> + </test> + </tests> + <help><![CDATA[ + **What it Does** + ]]></help> + <citations> + <citation type="doi">10.1093/bioinformatics/bts573</citation> + </citations> +</tool> +