diff seqtk_telo/seqtk_telo.xml @ 1:0183cad9d13b draft

planemo upload
author fubar
date Thu, 22 Feb 2024 10:48:01 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/seqtk_telo/seqtk_telo.xml	Thu Feb 22 10:48:01 2024 +0000
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+<tool name="seqtk_telo" id="seqtk_telo" version="1.4" profile="22.05">
+  <!--Source in git at: https://github.com/fubar2/galaxy_tf_overlay-->
+  <!--Created by toolfactory@galaxy.org at 09/12/2023 14:04:09 using the Galaxy Tool Factory.-->
+  <description></description>
+  <requirements>
+    <requirement version="1.4" type="package">seqtk</requirement>
+  </requirements>
+  <version_command><![CDATA[echo "1.4"]]></version_command>
+  <command><![CDATA[bash $runme]]></command>
+  <configfiles>
+    <configfile name="runme"><![CDATA[seqtk telo $infa > $out_bed ]]></configfile>
+  </configfiles>
+  <inputs>
+    <param name="infa" type="data" optional="false" label="Fasta input for telomere finding" help="" format="fasta" multiple="false"/>
+  </inputs>
+  <outputs>
+    <data name="out_bed" format="bed" label="seqtk_telo on $infa.element_identifier" hidden="false"/>
+  </outputs>
+  <tests>
+    <test>
+      <output name="out_bed" value="out_bed_sample" compare="diff" lines_diff="0"/>
+      <param name="infa" value="infa_sample"/>
+    </test>
+  </tests>
+  <help><![CDATA[
+ **What it Does**
+  ]]></help>
+  <citations>
+    <citation type="doi">10.1093/bioinformatics/bts573</citation>
+  </citations>
+</tool>
+