Mercurial > repos > gga > chado_feature_get_features

annotate feature_get_features.xml @ 11:95221c68838f draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit bc69ce09372c8c2701b726c326e671af279adb4d
author gga
date Thu, 11 Jul 2019 08:38:44 -0400
parents 7028154f9c93
children df8527b4f2b8
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1 <?xml version="1.0"?>
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2 <tool id="feature_get_features" name="Chado features get" version="@WRAPPER_VERSION@.1">
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3 <description></description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
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8 <code file="chado.py"/>
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9 <command detect_errors="aggressive"><![CDATA[
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10 @START_PSQL@ &&
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12 chakin feature get_features
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14 #if $organism:
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15 --organism_id '$organism'
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16 #end if
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17 #if $analysis_id:
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18 --analysis_id '$analysis_id'
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19 #end if
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20 #if $name:
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21 --name '$name'
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22 #end if
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23 #if $uniquename:
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24 --uniquename '$uniquename'
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25 #end if
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27 | jq -S . > '$results'
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29 @STOP_PSQL@
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30 ]]></command>
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31 <inputs>
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32 <expand macro="psql_target"/>
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33 <!-- options -->
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34 <param argument="--organism" type="select" dynamic_options="list_organisms()" label="Organism" />
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35 <param argument="--analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" />
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36 <param name="name" label="Name" argument="--name" type="text" help="name filter" />
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37 <param name="uniquename" label="Uniquename" argument="--uniquename" type="text" help="uniquename filter" />
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38
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39 </inputs>
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40 <outputs>
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41 <data format="json" name="results"/>
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42 </outputs>
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43 <help>
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44 Get all or some features
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46 @HELP@
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47 </help>
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48 </tool>