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annotate abricate_list.xml @ 3:6e9aea89e388 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 962161e1dde26559d0bc1ce5d7b75d2f354606c5
author iuc
date Mon, 04 Sep 2017 02:47:12 -0400
parents 2aa02d2a6af3
children 78c75f134c16
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1 <tool id="abricate_list" name="ABRicate List" version="0.7">
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2 <requirements>
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3 <requirement type="package" version="0.7">abricate</requirement>
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4 </requirements>
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6 <version_command>abricate --version</version_command>
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7
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8 <command detect_errors="exit_code"><![CDATA[
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9 abricate --list > '$report'
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10 ]]></command>
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11
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12 <inputs>
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13 </inputs>
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15 <outputs>
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16 <data name="report" format="txt" label="${tool.name} - list of databases"/>
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17 </outputs>
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18
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19 <tests>
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20 <test>
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21 <output name="report" ftype="txt" file="output_list.txt" compare="contains" />
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22 </test>
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23 </tests>
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24
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25 <help><![CDATA[
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26 **What it does**
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27
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28 ABRicate List will list all the antibiotic databases used by ABRicate. The database of these genes is built from ResFinder.
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29 ]]></help>
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30
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31 <citations>
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32 <citation type="bibtex">
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33 @UNPUBLISHED{Seemann2016,
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34 author = {Seemann, Torsten},
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35 title = {ABRicate: mass screening of contigs for antiobiotic resistance genes},
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36 year = {2016},
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37 url = {https://github.com/tseemann/abricate},
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38 }
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39 </citation>
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40 </citations>
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41 </tool>