Mercurial > repos > iuc > onto_tk_get_relationship_types

annotate get_relationship_types.xml @ 1:a6c8e5934ed2 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 744e26ea6d468c83ec5904221929092f8a2e78ba"
author iuc
date Wed, 22 Jan 2020 17:26:49 -0500
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c5b1acc3c42c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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1 <tool id="onto_tk_get_relationship_types" name="Get all the relationship types" version="@VERSION@.0">
c5b1acc3c42c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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2 <description>from the given OBO ontology</description>
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3 <macros>
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4 <import>onto_macros.xml</import>
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5 </macros>
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6 <expand macro="requirements" />
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7 <command detect_errors="aggressive">
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8 get_relationship_types.pl
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9 -f '$input' | sort > '$output'
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10 </command>
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11 <inputs>
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12 <expand macro="input_ontology" />
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13 </inputs>
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14 <outputs>
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15 <data format="tabular" name="output" label="Relationship types of ${on_string}">
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16 <actions>
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17 <action name="column_names" type="metadata" default="relationship type" />
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18 </actions>
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19 </data>
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20 </outputs>
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21 <tests>
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22 <test>
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23 <param name="input" value="pre_cco_core.obo"/>
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a6c8e5934ed2 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 744e26ea6d468c83ec5904221929092f8a2e78ba"
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24 <output name="output" file="relationship_types.tab" sort="true"/>
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25 </test>
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26 </tests>
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27 <help>
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29 .. class:: infomark
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32 Collects all the names of the relationship_types in a given ontology.
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34 **Example**
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36 If you ask for the relationships of the Gene Ontology, you will get::
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38 is_a
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39 part_of
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40 regulates
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41 has_part
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42 negatively_regulates
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43 positively_regulates
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45 </help>
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46 <expand macro="citations" />
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47 </tool>
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48