Mercurial > repos > iuc > package_khmer_2_0

annotate tool_dependencies.xml @ 2:c02c1e1abd48 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 0d9b76366bdec662cfd283201ee957464d656632
author iuc
date Wed, 16 Dec 2015 08:48:57 -0500
parents 09e6ec4fbbe0
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f257b2dba774 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be9a20423d1a6ec33d59341e0e61b535127bbce2
iuc
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1 <?xml version="1.0"?>
f257b2dba774 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be9a20423d1a6ec33d59341e0e61b535127bbce2
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2 <tool_dependency>
1
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3 <package name="bz2file" version="0.98">
09e6ec4fbbe0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 9cb24ec3ae97ad10c28eda52169feea44e2cddfa
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4 <repository changeset_revision="73382c8fa8f3" name="package_bz2file_0_98" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
09e6ec4fbbe0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 9cb24ec3ae97ad10c28eda52169feea44e2cddfa
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5 </package>
09e6ec4fbbe0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 9cb24ec3ae97ad10c28eda52169feea44e2cddfa
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6 <package name="screed" version="0.9">
09e6ec4fbbe0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 9cb24ec3ae97ad10c28eda52169feea44e2cddfa
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7 <repository changeset_revision="639e5e37404d" name="package_screed_0_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
09e6ec4fbbe0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 9cb24ec3ae97ad10c28eda52169feea44e2cddfa
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8 </package>
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c02c1e1abd48 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 0d9b76366bdec662cfd283201ee957464d656632
iuc
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9 <package name="setuptools" version="19.0">
c02c1e1abd48 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 0d9b76366bdec662cfd283201ee957464d656632
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10 <repository changeset_revision="c5b7a807ab1e" name="package_setuptools_19_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
c02c1e1abd48 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 0d9b76366bdec662cfd283201ee957464d656632
iuc
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11 </package>
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f257b2dba774 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be9a20423d1a6ec33d59341e0e61b535127bbce2
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12 <package name="khmer" version="2.0">
f257b2dba774 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be9a20423d1a6ec33d59341e0e61b535127bbce2
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13 <install version="1.0">
f257b2dba774 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be9a20423d1a6ec33d59341e0e61b535127bbce2
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14 <actions>
1
09e6ec4fbbe0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 9cb24ec3ae97ad10c28eda52169feea44e2cddfa
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15 <action md5sum="1f610abd021254e21b082179a100cd39" type="download_by_url">https://pypi.python.org/packages/source/k/khmer/khmer-2.0.tar.gz</action>
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c02c1e1abd48 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 0d9b76366bdec662cfd283201ee957464d656632
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16 <action type="set_environment_for_install">
c02c1e1abd48 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 0d9b76366bdec662cfd283201ee957464d656632
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17 <repository changeset_revision="c5b7a807ab1e" name="package_setuptools_19_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
c02c1e1abd48 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 0d9b76366bdec662cfd283201ee957464d656632
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18 <package name="setuptools" version="19.0" />
c02c1e1abd48 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 0d9b76366bdec662cfd283201ee957464d656632
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19 </repository>
c02c1e1abd48 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 0d9b76366bdec662cfd283201ee957464d656632
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20 </action>
1
09e6ec4fbbe0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 9cb24ec3ae97ad10c28eda52169feea44e2cddfa
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21 <action type="make_directory">$INSTALL_DIR/lib/python</action>
09e6ec4fbbe0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 9cb24ec3ae97ad10c28eda52169feea44e2cddfa
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22 <action type="shell_command">
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23 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
09e6ec4fbbe0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 9cb24ec3ae97ad10c28eda52169feea44e2cddfa
iuc
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24 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
09e6ec4fbbe0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 9cb24ec3ae97ad10c28eda52169feea44e2cddfa
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25 </action>
09e6ec4fbbe0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 9cb24ec3ae97ad10c28eda52169feea44e2cddfa
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26 <action type="set_environment">
09e6ec4fbbe0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 9cb24ec3ae97ad10c28eda52169feea44e2cddfa
iuc
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27 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
09e6ec4fbbe0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 9cb24ec3ae97ad10c28eda52169feea44e2cddfa
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28 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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f257b2dba774 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be9a20423d1a6ec33d59341e0e61b535127bbce2
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29 </action>
f257b2dba774 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be9a20423d1a6ec33d59341e0e61b535127bbce2
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30 </actions>
f257b2dba774 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be9a20423d1a6ec33d59341e0e61b535127bbce2
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31 </install>
f257b2dba774 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be9a20423d1a6ec33d59341e0e61b535127bbce2
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32 </package>
f257b2dba774 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be9a20423d1a6ec33d59341e0e61b535127bbce2
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33 </tool_dependency>