Mercurial > repos > jankanis > blast2html
annotate test-data/blast xml example4.html @ 120:2729c2326235
Fix for Rikilt issue 13
Hit e-value and identity% should be taken from the hsp with the highest
bit score. Previously each of these values was calculated independently.
Also use arrays for cover calculation instead of python lists and
refactor the hit_info() code a bit.
| author | Jan Kanis <jan.code@jankanis.nl> |
|---|---|
| date | Thu, 31 Jul 2014 16:14:36 +0200 |
| parents | 7f3f8c10f44b |
| children |
| rev | line source |
|---|---|
| 32 | 1 <!DOCTYPE html> |
| 2 <html> | |
| 3 <head> | |
| 4 <meta charset="UTF-8"> | |
|
33
3bb5da68305e
add test update script, add url to github page
Jan Kanis <jan.code@jankanis.nl>
parents:
32
diff
changeset
|
5 <meta name=generator content="blast2html; see https://github.com/thehyve/blast2html/"> |
| 32 | 6 |
| 7 <title>Blast output</title> | |
| 8 | |
| 9 <style> | |
| 10 body { | |
| 11 color: #333333; | |
| 12 font-family: Arial,Sans-Serif; | |
| 13 } | |
| 14 | |
| 15 :link { | |
| 16 color: #336699; | |
| 17 } | |
| 18 | |
| 19 .right { | |
| 20 float: right; | |
| 21 } | |
| 22 | |
| 23 /* Galaxy with html sanitization enabled strips the header of this html page. If so, show the user a warning.*/ | |
| 24 #strip_html_warning { | |
| 25 display: none; | |
| 26 } | |
| 27 | |
| 28 #content { | |
| 29 margin: 0 2em; | |
| 30 padding: 0.5em; | |
| 31 border: 1px solid #888888; | |
| 32 background-color: #d3dff5; | |
| 33 } | |
| 34 | |
| 35 h1, h2, h3, h4, h5, h6 { | |
| 36 color: #2A6979; | |
| 37 font-family: arial,verdana,sans-serif; | |
| 38 letter-spacing: -1px; | |
| 39 margin: 1.2em 0 0.3em; | |
| 40 } | |
| 41 | |
| 42 h1 { | |
| 114 | 43 font-size: 200%; |
| 44 } | |
| 45 | |
| 46 h2 { | |
| 47 font-size: 150%; | |
| 48 } | |
| 49 | |
| 50 h1, h2 { | |
| 32 | 51 border-bottom: 1px solid #CCCCCC; |
| 52 padding-bottom: 0.1em; | |
| 53 } | |
| 54 | |
| 114 | 55 h3 { |
| 32 | 56 font-size: 120%; |
| 57 font-weight: bold; | |
| 58 } | |
| 59 | |
| 114 | 60 h5.darkHeader { |
| 32 | 61 color: #4D4D4D; |
| 62 letter-spacing: 0; | |
| 63 font-weight: bold; | |
| 114 | 64 font-size: 108%; |
| 32 | 65 } |
| 66 | |
| 67 #nodata { | |
| 68 font-weight: bold; | |
| 69 } | |
| 70 | |
| 71 .index { | |
| 72 margin-bottom: 3em; | |
| 73 } | |
| 74 .index div.indexentry { | |
| 75 margin: 1.2em 1.6em; | |
| 76 font-weight: bold; | |
| 77 font-size: 100%; | |
| 78 } | |
| 79 | |
| 80 .headerdata { | |
| 81 font-size: 90%; | |
| 82 } | |
| 83 .headerdata .param { | |
| 84 font-weight: bold; | |
| 85 text-align: right; | |
| 86 padding: 0 1em; | |
| 87 } | |
| 88 | |
| 89 .grey { | |
| 90 background-color: #eeeeee; | |
| 91 border: 1px solid #cccccc; | |
| 92 padding: 1em; | |
| 93 } | |
| 94 | |
| 95 .white { | |
| 96 background-color: white; | |
| 97 border: 1px solid #cccccc; | |
| 98 padding: 1.5em 2%; | |
| 99 } | |
| 100 | |
| 101 .graphicrow { | |
| 102 clear: left; | |
| 103 width: 100%; | |
| 104 } | |
| 105 | |
| 106 .graphicitem { | |
| 107 float: left; | |
| 108 } | |
| 109 | |
| 110 | |
| 111 | |
| 112 .graphics .grey { | |
| 113 text-align: center; | |
| 114 } | |
| 115 | |
| 116 .graphic { | |
| 117 background-color: white; | |
| 118 border: 2px solid black; | |
| 119 padding: 1.5em; | |
| 120 margin: auto; | |
| 121 } | |
| 122 | |
| 123 .centered, .defline, div.legend, div.tablewrapper { | |
| 124 margin-left: auto; | |
| 125 margin-right: auto; | |
| 126 } | |
| 127 | |
| 128 .defline { | |
| 129 background-color: white; | |
| 130 border: 1px solid black; | |
| 131 margin: .5em auto; | |
| 132 padding-left: .2em; | |
| 133 padding-right: .2em; | |
| 134 max-width: 50em; | |
| 135 text-align: left; | |
| 136 height: 2.8em; | |
| 59 | 137 overflow: hidden; |
| 32 | 138 } |
| 139 | |
| 140 div.legend { | |
| 141 max-width: 40em; | |
| 142 } | |
| 143 div.legend div { | |
| 144 width: 100%; | |
| 145 color: white; | |
| 146 font-weight: bold; | |
| 147 border-spacing: 0; | |
| 148 } | |
| 149 div.legend div .graphicitem { | |
| 150 width: 20%; | |
| 151 padding: 0; | |
| 152 margin: 0; | |
| 153 border: none; | |
| 154 } | |
| 155 | |
| 156 div.tablewrapper { | |
| 157 width: 50%; | |
| 158 min-width: 60em; | |
| 159 } | |
| 160 | |
| 161 /* For small widths we give the graphic 100% */ | |
| 162 @media (max-width: 72.5em) { | |
| 163 div.tablewrapper { | |
| 164 width: 100%; | |
| 165 min-width: 0px; | |
| 166 } | |
| 167 } | |
| 168 | |
| 169 .scale { | |
| 170 width: 100%; | |
| 171 margin: .5em 0; | |
| 172 font-weight: bold; | |
| 173 } | |
| 174 .scale div { | |
| 175 color: red; | |
| 176 text-align: left; | |
| 177 } | |
| 178 .scale .graphicrow { | |
| 179 margin: .5em 0 .5em 0; | |
| 180 color: white; | |
| 181 } | |
| 182 .scale .graphicitem { | |
| 183 position: relative; | |
| 184 } | |
| 185 .scale .graphicitem div { | |
| 186 margin: 0 1px; | |
| 187 padding: 0 2px; | |
| 188 text-align: right; | |
| 189 background-color: red; | |
| 190 color: white; | |
| 191 } | |
| 192 .scale .graphicitem:first-child div { | |
| 193 margin-left: 0px; | |
| 194 } | |
| 195 .scale .graphicitem:last-child div { | |
| 196 margin-right: 0px; | |
| 197 } | |
| 198 .scale .graphicitem .lastlabel { | |
| 199 position: absolute; | |
| 200 top: 0px; | |
| 201 left: 100%; | |
| 202 background-color: transparent; | |
| 203 color: red; | |
| 204 } | |
| 205 | |
| 206 a.matchresult { | |
| 207 display: block; | |
| 208 margin: 0; | |
| 209 padding: 0; | |
| 210 } | |
| 211 div.matchrow { | |
| 212 margin-top: 4px; | |
| 213 } | |
| 214 div.matchrow, div.matchitem { | |
| 215 height: 4px; | |
| 216 } | |
| 217 | |
| 218 | |
| 219 table.descriptiontable { | |
| 220 font-size: 85%; | |
| 221 border: 1px solid #97b0c8; | |
| 222 border-spacing: 0; | |
| 223 color: #222222; | |
| 224 line-height: 1.3em; | |
| 225 background-color: white; | |
| 226 } | |
| 227 table.descriptiontable col:first-child { | |
| 228 width: 100%; | |
| 229 } | |
| 230 table.descriptiontable tr:hover { | |
| 231 background-color: #D5DEE3; | |
| 232 } | |
| 233 table.descriptiontable th { | |
| 234 color: #14376C; | |
| 235 font-weight: normal; | |
| 236 background-color: #F0F0F0; | |
| 237 background: linear-gradient(#FFFFFF, #F0F0F0); | |
| 238 border-bottom: 1px solid #D4DFE9; | |
| 239 border-right: 1px solid #CFCFCF; | |
| 240 border-left: 0px solid black; | |
| 241 border-top: 0px solid black; | |
| 242 } | |
| 243 table.descriptiontable td { | |
| 244 overflow: hidden; | |
| 245 text-align: center; | |
| 246 padding: .4em .8em; | |
| 247 } | |
| 248 table.descriptiontable td div { | |
| 249 width: 1em; | |
| 250 overflow: visible; | |
| 251 white-space: nowrap; | |
| 252 text-align: left; | |
| 253 } | |
| 254 | |
| 255 | |
| 256 | |
| 257 .alignments .white { | |
| 258 padding: 1.5em 1em; | |
| 259 } | |
| 260 | |
| 261 .alignment { | |
| 262 border-top: 1px solid black; | |
| 263 padding-left: 1em; | |
| 264 padding-right: 1em; | |
| 265 } | |
| 266 | |
| 267 div.linkheader { | |
| 268 padding-top: .2em; | |
| 269 font-size: 85%; | |
| 270 color: #14376C; | |
| 271 } | |
| 272 div.linkheader a.linkheader { | |
| 273 margin-right: 1em; | |
| 274 } | |
| 275 div.linkheader .right a { | |
| 276 text-decoration: none; | |
| 277 } | |
| 278 | |
| 279 .title .hittitle { | |
| 280 color: #222222; | |
| 281 margin-bottom: .3em; | |
| 282 } | |
| 283 .title .titleinfo { | |
| 284 font-size: 80%; | |
| 285 margin-top: 0; | |
| 286 margin-bottom: .3em; | |
| 287 } | |
| 288 .title .titleinfo .b { | |
| 289 color: #606060; | |
| 290 font-weight: bold; | |
| 291 font-size: 90%; | |
| 292 } | |
| 293 | |
| 294 .moretitles { | |
| 295 margin: 1.2em; | |
| 296 } | |
| 297 .moretitles .titleinfo { | |
| 298 margin: 0; | |
| 299 padding: 0; | |
| 300 } | |
| 301 .moretitles .hittitle { | |
| 302 margin: .4em 0 .2em 0; | |
| 303 padding: 0; | |
| 304 } | |
| 305 | |
| 306 a.showmoretitles { | |
| 307 font-size: 75%; | |
| 308 color: #336699; | |
| 309 font-weight: bold; | |
| 310 margin-top: 0; | |
| 311 } | |
| 312 a.showmoretitles:hover { | |
| 313 } | |
| 314 | |
| 315 .hotspot { | |
| 316 color: #606060; | |
| 317 font-family: verdana, arial, sans-serif; | |
| 318 margin-bottom: 2.5em; | |
| 319 } | |
| 320 | |
| 321 .hotspot p.range { | |
| 322 font-size: 70%; | |
| 323 margin-top: 0; | |
| 324 margin-top: 1em; | |
| 325 margin-bottom: .2em; | |
| 326 } | |
| 327 .hotspot p.range span.range { | |
| 328 font-weight: bold; | |
| 329 } | |
| 330 .hotspot p.range a.range { | |
| 331 margin-left: .5em; | |
| 332 } | |
| 333 | |
| 334 table.hotspotstable { | |
| 335 border-top: 1px solid; | |
| 336 border-bottom: 1px solid; | |
| 337 text-align: left; | |
| 338 border-collapse: collapse; | |
| 339 } | |
| 340 table.hotspotstable th, table.hotspotstable td { | |
| 341 padding: .1em 1em; | |
| 342 } | |
| 343 table.hotspotstable th { | |
| 344 font-size: 70%; | |
| 345 } | |
| 346 table.hotspotstable td { | |
| 347 min-width: 7em; | |
| 348 color: #222222; | |
| 349 font-size: 80%; | |
| 350 } | |
| 351 | |
| 352 pre.alignmentgraphic { | |
| 353 color: #222222; | |
| 354 } | |
| 355 | |
| 356 footer { | |
| 357 text-align: center; | |
| 358 color: #cccccc; | |
| 359 font-size: 70%; | |
| 360 margin-top: 1em; | |
| 361 } | |
| 362 footer :link { | |
| 363 color: #5588cc; | |
| 364 } | |
| 365 | |
| 366 </style> | |
| 367 | |
| 368 <script type="text/javascript"> | |
| 369 function toggle_visibility(id) { | |
| 370 var e = document.getElementById(id); | |
| 371 if(e.style.display != 'block') | |
| 372 e.style.display = 'block'; | |
| 373 else | |
| 374 e.style.display = 'none'; | |
| 375 } | |
| 376 </script> | |
| 377 | |
| 378 </head> | |
| 379 | |
| 380 | |
| 381 <body> | |
| 382 | |
| 383 <div id="strip_html_warning"> | |
| 384 <!-- This div should be hidden by the header css block. Galaxy | |
| 385 strips all css, breaking this page but making this warning | |
| 386 visible. This warning contains some ugly old skool tabular html | |
| 387 layout that is not stripped. --> | |
| 388 <table bgcolor="#FFE5C9"><tr><td><font color="red"><b> | |
| 389 <font size=5><center>This html page seems to have been stripped by Galaxy.</center></font> | |
| 390 Disable Galaxy's html sanitization feature to view the full page (see <font face=monospace>sanitize_all_html</font> in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy. | |
| 391 </b></font></td></tr></table> | |
| 392 </div> | |
| 393 | |
| 394 <div id=content> | |
| 395 | |
| 114 | 396 <section class=header> |
| 397 | |
| 398 <h1>Nucleotide Blast results</h1> | |
| 399 | |
| 400 <table class=headerdata> | |
| 401 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr> | |
| 402 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr> | |
| 403 </table> | |
| 404 | |
| 405 </section> | |
| 406 | |
| 32 | 407 |
| 408 <section class=index> | |
| 114 | 409 <h2>Queries</h2> |
| 32 | 410 |
| 411 <div class=indexentry><a href="#match1"> | |
| 412 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) | |
| 413 (20 letters, 2 hits) | |
| 414 </a></div> | |
| 415 <div class=indexentry><a href="#match2"> | |
| 416 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) | |
| 417 (20 letters, 0 hits) | |
| 418 </a></div> | |
| 419 <div class=indexentry><a href="#match3"> | |
| 420 Query_3: Probe|NOST-Spec_(Genetic_ID) | |
| 421 (20 letters, 3 hits) | |
| 422 </a></div> | |
| 423 <div class=indexentry><a href="#match4"> | |
| 424 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R | |
| 425 (24 letters, 0 hits) | |
| 426 </a></div> | |
| 427 <div class=indexentry><a href="#match5"> | |
| 428 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R | |
| 429 (20 letters, 0 hits) | |
| 430 </a></div> | |
| 431 <div class=indexentry><a href="#match6"> | |
| 432 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R | |
| 433 (25 letters, 2 hits) | |
| 434 </a></div> | |
| 435 <div class=indexentry><a href="#match7"> | |
| 436 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R | |
| 437 (74 letters, 2 hits) | |
| 438 </a></div> | |
| 439 | |
| 440 </section> | |
| 441 | |
| 442 | |
| 443 <section class=match id=match1> | |
| 444 | |
| 114 | 445 <h2>Nucleotide Sequence (20 letters)</h2> |
| 32 | 446 |
| 447 <section class=header> | |
| 448 | |
| 449 <table class=headerdata> | |
| 114 | 450 <tr><td class=param>Query number:</td><td>1</td></tr> |
| 32 | 451 <tr><td class=param>Query ID:</td><td>Query_1</td></tr> |
| 114 | 452 <tr><td class=param>Definition line:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> |
| 453 <tr><td class=param>Length:</td><td>20</td></tr> | |
| 32 | 454 </table> |
| 455 | |
| 456 </section> | |
| 457 | |
| 458 | |
| 459 <section class=graphics> | |
| 114 | 460 <h3>Graphic Summary</h3> |
| 32 | 461 |
| 462 <div class=grey> | |
| 114 | 463 <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4> |
| 32 | 464 |
| 465 <div class=defline id=defline1> | |
| 466 Mouse-over to show defline and scores, click to show alignments | |
| 467 </div> | |
| 468 | |
| 469 <div class=graphic> | |
| 114 | 470 <h5 class=darkHeader>Color key for alignment scores</h5> |
| 32 | 471 <div class=legend><div class=graphicrow> |
| 472 <div class=graphicitem style="background-color: black"><40</div> | |
| 473 <div class=graphicitem style="background-color: blue">40–50</div> | |
| 474 <div class=graphicitem style="background-color: green">50–80</div> | |
| 475 <div class=graphicitem style="background-color: magenta">80–200</div> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
476 <div class=graphicitem style="background-color: red">≥200</div> |
| 32 | 477 </div></div> |
| 478 <div style="clear: left"></div> | |
| 479 | |
| 480 <div class=tablewrapper> | |
| 481 | |
| 482 <div class=scale> | |
| 483 <div>query:</div> | |
| 484 <div class=graphicrow> | |
| 485 <div> | |
| 77 | 486 <div class=graphicitem style="width: 10%"> |
| 32 | 487 <div>2</div> |
| 488 </div> | |
| 77 | 489 <div class=graphicitem style="width: 10%"> |
| 32 | 490 <div>4</div> |
| 491 </div> | |
| 77 | 492 <div class=graphicitem style="width: 10%"> |
| 32 | 493 <div>6</div> |
| 494 </div> | |
| 77 | 495 <div class=graphicitem style="width: 10%"> |
| 32 | 496 <div>8</div> |
| 497 </div> | |
| 77 | 498 <div class=graphicitem style="width: 10%"> |
| 32 | 499 <div>10</div> |
| 500 </div> | |
| 77 | 501 <div class=graphicitem style="width: 10%"> |
| 32 | 502 <div>12</div> |
| 503 </div> | |
| 77 | 504 <div class=graphicitem style="width: 10%"> |
| 32 | 505 <div>14</div> |
| 506 </div> | |
| 77 | 507 <div class=graphicitem style="width: 10%"> |
| 32 | 508 <div>16</div> |
| 509 </div> | |
| 77 | 510 <div class=graphicitem style="width: 10%"> |
| 32 | 511 <div>18</div> |
| 512 </div> | |
| 77 | 513 <div class=graphicitem style="width: 10%"> |
| 32 | 514 <div>20</div> |
| 515 </div> | |
| 516 </div> | |
| 517 </div> | |
| 518 <div style="clear: left"></div> | |
| 519 </div> | |
| 520 | |
| 521 <a class=matchresult | |
| 59 | 522 href="#hit1-1" |
| 32 | 523 onmouseover='document.getElementById("defline1").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"' |
| 524 onmouseout='document.getElementById("defline1").innerHTML="Mouse-over to show defline and scores, click to show alignments"' | |
| 525 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"> | |
| 526 <div class="matchrow graphicrow"> | |
| 527 <div class="matchitem graphicitem" | |
| 77 | 528 style="background-color: black; width: 100%"></div> |
| 32 | 529 </div> |
| 530 </a> | |
| 531 | |
| 532 <a class=matchresult | |
| 59 | 533 href="#hit1-2" |
| 32 | 534 onmouseover='document.getElementById("defline1").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"' |
| 535 onmouseout='document.getElementById("defline1").innerHTML="Mouse-over to show defline and scores, click to show alignments"' | |
| 536 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"> | |
| 537 <div class="matchrow graphicrow"> | |
| 538 <div class="matchitem graphicitem" | |
| 77 | 539 style="background-color: black; width: 100%"></div> |
| 32 | 540 </div> |
| 541 </a> | |
| 542 | |
| 543 </div> | |
| 544 </div> | |
| 545 </div> | |
| 546 </section> | |
| 547 | |
| 548 | |
| 549 | |
| 550 <section class=descriptions> | |
| 114 | 551 <h3>Descriptions</h3> |
| 32 | 552 |
| 553 <div class=grey><div class=white> | |
| 114 | 554 <h5 class=darkHeader>Sequences producing significant alignments:</h5> |
| 32 | 555 |
| 556 <table class=descriptiontable> | |
| 557 <col/><col/><col/><col/><col/><col/><col/> | |
| 558 <tr> | |
| 559 <th>Description</th> | |
| 560 <th>Max score</th> | |
| 561 <th>Total score</th> | |
| 562 <th>Query cover</th> | |
| 563 <th>E value</th> | |
| 564 <th>Ident</th> | |
| 565 <th>Accession</th> | |
| 566 </tr> | |
| 567 <tr> | |
| 59 | 568 <td><div><a href="#hit1-1" |
| 32 | 569 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000" |
| 59 | 570 id="description1-1"> |
| 32 | 571 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000 |
| 572 </a></div></td> | |
| 573 <td>40.1</td> | |
| 574 <td>40.1</td> | |
| 575 <td>100%</td> | |
| 576 <td>1.513e-07</td> | |
| 577 <td>100%</td> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
578 <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">5</a></td> |
| 32 | 579 </tr> |
| 580 <tr> | |
| 59 | 581 <td><div><a href="#hit1-2" |
| 32 | 582 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000" |
| 59 | 583 id="description1-2"> |
| 32 | 584 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000 |
| 585 </a></div></td> | |
| 586 <td>40.1</td> | |
| 587 <td>40.1</td> | |
| 588 <td>100%</td> | |
| 589 <td>1.513e-07</td> | |
| 590 <td>100%</td> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
591 <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">2</a></td> |
| 32 | 592 </tr> |
| 593 </table> | |
| 594 | |
| 595 </div></div> | |
| 596 </section> | |
| 597 | |
| 598 | |
| 599 | |
| 600 <section class=alignments> | |
| 114 | 601 <h3>Alignments</h3> |
| 32 | 602 |
| 603 <div class=grey><div class=white> | |
| 59 | 604 <div class=alignment id=hit1-1> |
| 32 | 605 |
| 606 <div class=linkheader> | |
| 59 | 607 <div class=right><a href="#description1-1">Descriptions</a></div> |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
608 <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">Gene Bank</a> |
| 32 | 609 </div> |
| 610 | |
| 611 <div class=title> | |
| 612 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p> | |
| 613 <p class=titleinfo> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
614 <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|5</a> |
| 32 | 615 <span class=b>Length:</span> 2457 |
| 616 <span class=b>Number of Matches:</span> 1 | |
| 617 </p> | |
| 618 </div> | |
| 619 | |
| 620 | |
| 59 | 621 <div class=hotspot id=hotspot1-1-1> |
| 32 | 622 <p class=range> |
| 623 <span class=range>Range 1: 2119 to 2138</span> | |
| 624 </p> | |
| 625 | |
| 626 <table class=hotspotstable> | |
| 627 <tr> | |
| 628 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> | |
| 629 </tr> | |
| 630 <tr> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
631 <td>40.14 bits (20)</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
632 <td>1.51296e-07</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
633 <td>20/20 (100%)</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
634 <td>0/20 (0%)</td> |
| 32 | 635 <td>Plus/Plus</td> |
| 636 </tr> | |
| 637 </table> | |
| 638 | |
| 639 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20 | |
| 640 |||||||||||||||||||| | |
| 641 Subject 2119 AGCGCGCAAACTAGGATAAA 2138</pre> | |
| 642 </div> | |
| 643 | |
| 644 </div> | |
| 645 | |
| 59 | 646 <div class=alignment id=hit1-2> |
| 32 | 647 |
| 648 <div class=linkheader> | |
| 59 | 649 <div class=right><a href="#description1-2">Descriptions</a></div> |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
650 <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">Gene Bank</a> |
| 32 | 651 </div> |
| 652 | |
| 653 <div class=title> | |
| 654 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p> | |
| 655 <p class=titleinfo> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
656 <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|2</a> |
| 32 | 657 <span class=b>Length:</span> 323 |
| 658 <span class=b>Number of Matches:</span> 1 | |
| 659 </p> | |
| 660 </div> | |
| 661 | |
| 662 | |
| 59 | 663 <div class=hotspot id=hotspot1-2-1> |
| 32 | 664 <p class=range> |
| 665 <span class=range>Range 1: 200 to 219</span> | |
| 666 </p> | |
| 667 | |
| 668 <table class=hotspotstable> | |
| 669 <tr> | |
| 670 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> | |
| 671 </tr> | |
| 672 <tr> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
673 <td>40.14 bits (20)</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
674 <td>1.51296e-07</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
675 <td>20/20 (100%)</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
676 <td>0/20 (0%)</td> |
| 32 | 677 <td>Plus/Plus</td> |
| 678 </tr> | |
| 679 </table> | |
| 680 | |
| 681 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20 | |
| 682 |||||||||||||||||||| | |
| 683 Subject 200 AGCGCGCAAACTAGGATAAA 219</pre> | |
| 684 </div> | |
| 685 | |
| 686 </div> | |
| 687 | |
| 688 </div></div> | |
| 689 </section> | |
| 690 </section> | |
| 691 | |
| 692 <section class=match id=match2> | |
| 693 | |
| 114 | 694 <h2>Nucleotide Sequence (20 letters)</h2> |
| 32 | 695 |
| 696 <section class=header> | |
| 697 | |
| 698 <table class=headerdata> | |
| 114 | 699 <tr><td class=param>Query number:</td><td>2</td></tr> |
| 700 <tr><td class=param>Query ID:</td><td>Query_2</td></tr> | |
| 701 <tr><td class=param>Definition line:</td><td>Reverse_Primer|NOST-Spec_(Genetic_ID)</td></tr> | |
| 702 <tr><td class=param>Length:</td><td>20</td></tr> | |
| 32 | 703 </table> |
| 704 | |
| 705 </section> | |
| 706 | |
| 707 <section> | |
| 114 | 708 <h3>No Hits</h3> |
| 32 | 709 <div class=grey> |
| 710 <table class=headerdata> | |
| 711 <tr><td class=param>Message:</td><td>No hits found</td></tr> | |
| 712 </table> | |
| 713 </div> | |
| 714 </section> | |
| 715 </section> | |
| 716 | |
| 717 <section class=match id=match3> | |
| 718 | |
| 114 | 719 <h2>Nucleotide Sequence (20 letters)</h2> |
| 32 | 720 |
| 721 <section class=header> | |
| 722 | |
| 723 <table class=headerdata> | |
| 114 | 724 <tr><td class=param>Query number:</td><td>3</td></tr> |
| 725 <tr><td class=param>Query ID:</td><td>Query_3</td></tr> | |
| 726 <tr><td class=param>Definition line:</td><td>Probe|NOST-Spec_(Genetic_ID)</td></tr> | |
| 727 <tr><td class=param>Length:</td><td>20</td></tr> | |
| 32 | 728 </table> |
| 729 | |
| 730 </section> | |
| 731 | |
| 732 | |
| 733 <section class=graphics> | |
| 114 | 734 <h3>Graphic Summary</h3> |
| 32 | 735 |
| 736 <div class=grey> | |
| 114 | 737 <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4> |
| 32 | 738 |
| 739 <div class=defline id=defline3> | |
| 740 Mouse-over to show defline and scores, click to show alignments | |
| 741 </div> | |
| 742 | |
| 743 <div class=graphic> | |
| 114 | 744 <h5 class=darkHeader>Color key for alignment scores</h5> |
| 32 | 745 <div class=legend><div class=graphicrow> |
| 746 <div class=graphicitem style="background-color: black"><40</div> | |
| 747 <div class=graphicitem style="background-color: blue">40–50</div> | |
| 748 <div class=graphicitem style="background-color: green">50–80</div> | |
| 749 <div class=graphicitem style="background-color: magenta">80–200</div> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
750 <div class=graphicitem style="background-color: red">≥200</div> |
| 32 | 751 </div></div> |
| 752 <div style="clear: left"></div> | |
| 753 | |
| 754 <div class=tablewrapper> | |
| 755 | |
| 756 <div class=scale> | |
| 757 <div>query:</div> | |
| 758 <div class=graphicrow> | |
| 759 <div> | |
| 77 | 760 <div class=graphicitem style="width: 10%"> |
| 32 | 761 <div>2</div> |
| 762 </div> | |
| 77 | 763 <div class=graphicitem style="width: 10%"> |
| 32 | 764 <div>4</div> |
| 765 </div> | |
| 77 | 766 <div class=graphicitem style="width: 10%"> |
| 32 | 767 <div>6</div> |
| 768 </div> | |
| 77 | 769 <div class=graphicitem style="width: 10%"> |
| 32 | 770 <div>8</div> |
| 771 </div> | |
| 77 | 772 <div class=graphicitem style="width: 10%"> |
| 32 | 773 <div>10</div> |
| 774 </div> | |
| 77 | 775 <div class=graphicitem style="width: 10%"> |
| 32 | 776 <div>12</div> |
| 777 </div> | |
| 77 | 778 <div class=graphicitem style="width: 10%"> |
| 32 | 779 <div>14</div> |
| 780 </div> | |
| 77 | 781 <div class=graphicitem style="width: 10%"> |
| 32 | 782 <div>16</div> |
| 783 </div> | |
| 77 | 784 <div class=graphicitem style="width: 10%"> |
| 32 | 785 <div>18</div> |
| 786 </div> | |
| 77 | 787 <div class=graphicitem style="width: 10%"> |
| 32 | 788 <div>20</div> |
| 789 </div> | |
| 790 </div> | |
| 791 </div> | |
| 792 <div style="clear: left"></div> | |
| 793 </div> | |
| 794 | |
| 795 <a class=matchresult | |
| 59 | 796 href="#hit3-1" |
| 32 | 797 onmouseover='document.getElementById("defline3").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"' |
| 798 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"' | |
| 799 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"> | |
| 800 <div class="matchrow graphicrow"> | |
| 801 <div class="matchitem graphicitem" | |
| 77 | 802 style="background-color: black; width: 100%"></div> |
| 32 | 803 </div> |
| 804 </a> | |
| 805 | |
| 806 <a class=matchresult | |
| 59 | 807 href="#hit3-2" |
| 32 | 808 onmouseover='document.getElementById("defline3").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"' |
| 809 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"' | |
| 810 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"> | |
| 811 <div class="matchrow graphicrow"> | |
| 812 <div class="matchitem graphicitem" | |
| 77 | 813 style="background-color: black; width: 100%"></div> |
| 32 | 814 </div> |
| 815 </a> | |
| 816 | |
| 817 <a class=matchresult | |
| 59 | 818 href="#hit3-3" |
| 32 | 819 onmouseover='document.getElementById("defline3").innerHTML="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3\u0027UTR/plant_junction_region.|-9105899556052450000"' |
| 820 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"' | |
| 821 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000"> | |
| 822 <div class="matchrow graphicrow"> | |
| 823 <div class="matchitem graphicitem" | |
| 77 | 824 style="background-color: transparent; width: 15%"></div> |
| 32 | 825 <div class="matchitem graphicitem" |
| 77 | 826 style="background-color: black; width: 85%"></div> |
| 32 | 827 </div> |
| 828 </a> | |
| 829 | |
| 830 </div> | |
| 831 </div> | |
| 832 </div> | |
| 833 </section> | |
| 834 | |
| 835 | |
| 836 | |
| 837 <section class=descriptions> | |
| 114 | 838 <h3>Descriptions</h3> |
| 32 | 839 |
| 840 <div class=grey><div class=white> | |
| 114 | 841 <h5 class=darkHeader>Sequences producing significant alignments:</h5> |
| 32 | 842 |
| 843 <table class=descriptiontable> | |
| 844 <col/><col/><col/><col/><col/><col/><col/> | |
| 845 <tr> | |
| 846 <th>Description</th> | |
| 847 <th>Max score</th> | |
| 848 <th>Total score</th> | |
| 849 <th>Query cover</th> | |
| 850 <th>E value</th> | |
| 851 <th>Ident</th> | |
| 852 <th>Accession</th> | |
| 853 </tr> | |
| 854 <tr> | |
| 59 | 855 <td><div><a href="#hit3-1" |
| 32 | 856 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000" |
| 59 | 857 id="description3-1"> |
| 32 | 858 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000 |
| 859 </a></div></td> | |
| 860 <td>40.1</td> | |
| 861 <td>40.1</td> | |
| 862 <td>100%</td> | |
| 863 <td>1.513e-07</td> | |
| 864 <td>100%</td> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
865 <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">5</a></td> |
| 32 | 866 </tr> |
| 867 <tr> | |
| 59 | 868 <td><div><a href="#hit3-2" |
| 32 | 869 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000" |
| 59 | 870 id="description3-2"> |
| 32 | 871 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000 |
| 872 </a></div></td> | |
| 873 <td>40.1</td> | |
| 874 <td>40.1</td> | |
| 875 <td>100%</td> | |
| 876 <td>1.513e-07</td> | |
| 877 <td>100%</td> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
878 <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">2</a></td> |
| 32 | 879 </tr> |
| 880 <tr> | |
| 59 | 881 <td><div><a href="#hit3-3" |
| 32 | 882 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000" |
| 59 | 883 id="description3-3"> |
| 32 | 884 AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000 |
| 885 </a></div></td> | |
| 886 <td>34.2</td> | |
| 887 <td>34.2</td> | |
| 888 <td>85%</td> | |
| 889 <td>9.334e-06</td> | |
| 890 <td>100%</td> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
891 <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&log$=nuclalign">1</a></td> |
| 32 | 892 </tr> |
| 893 </table> | |
| 894 | |
| 895 </div></div> | |
| 896 </section> | |
| 897 | |
| 898 | |
| 899 | |
| 900 <section class=alignments> | |
| 114 | 901 <h3>Alignments</h3> |
| 32 | 902 |
| 903 <div class=grey><div class=white> | |
| 59 | 904 <div class=alignment id=hit3-1> |
| 32 | 905 |
| 906 <div class=linkheader> | |
| 59 | 907 <div class=right><a href="#description3-1">Descriptions</a></div> |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
908 <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">Gene Bank</a> |
| 32 | 909 </div> |
| 910 | |
| 911 <div class=title> | |
| 912 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p> | |
| 913 <p class=titleinfo> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
914 <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|5</a> |
| 32 | 915 <span class=b>Length:</span> 2457 |
| 916 <span class=b>Number of Matches:</span> 1 | |
| 917 </p> | |
| 918 </div> | |
| 919 | |
| 920 | |
| 59 | 921 <div class=hotspot id=hotspot3-1-1> |
| 32 | 922 <p class=range> |
| 923 <span class=range>Range 1: 2143 to 2162</span> | |
| 924 </p> | |
| 925 | |
| 926 <table class=hotspotstable> | |
| 927 <tr> | |
| 928 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> | |
| 929 </tr> | |
| 930 <tr> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
931 <td>40.14 bits (20)</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
932 <td>1.51296e-07</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
933 <td>20/20 (100%)</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
934 <td>0/20 (0%)</td> |
| 32 | 935 <td>Plus/Plus</td> |
| 936 </tr> | |
| 937 </table> | |
| 938 | |
| 939 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20 | |
| 940 |||||||||||||||||||| | |
| 941 Subject 2143 CGCGCGCGGTGTCATCTATG 2162</pre> | |
| 942 </div> | |
| 943 | |
| 944 </div> | |
| 945 | |
| 59 | 946 <div class=alignment id=hit3-2> |
| 32 | 947 |
| 948 <div class=linkheader> | |
| 59 | 949 <div class=right><a href="#description3-2">Descriptions</a></div> |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
950 <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">Gene Bank</a> |
| 32 | 951 </div> |
| 952 | |
| 953 <div class=title> | |
| 954 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p> | |
| 955 <p class=titleinfo> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
956 <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|2</a> |
| 32 | 957 <span class=b>Length:</span> 323 |
| 958 <span class=b>Number of Matches:</span> 1 | |
| 959 </p> | |
| 960 </div> | |
| 961 | |
| 962 | |
| 59 | 963 <div class=hotspot id=hotspot3-2-1> |
| 32 | 964 <p class=range> |
| 965 <span class=range>Range 1: 224 to 243</span> | |
| 966 </p> | |
| 967 | |
| 968 <table class=hotspotstable> | |
| 969 <tr> | |
| 970 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> | |
| 971 </tr> | |
| 972 <tr> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
973 <td>40.14 bits (20)</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
974 <td>1.51296e-07</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
975 <td>20/20 (100%)</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
976 <td>0/20 (0%)</td> |
| 32 | 977 <td>Plus/Plus</td> |
| 978 </tr> | |
| 979 </table> | |
| 980 | |
| 981 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20 | |
| 982 |||||||||||||||||||| | |
| 983 Subject 224 CGCGCGCGGTGTCATCTATG 243</pre> | |
| 984 </div> | |
| 985 | |
| 986 </div> | |
| 987 | |
| 59 | 988 <div class=alignment id=hit3-3> |
| 32 | 989 |
| 990 <div class=linkheader> | |
| 59 | 991 <div class=right><a href="#description3-3">Descriptions</a></div> |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
992 <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&log$=nuclalign">Gene Bank</a> |
| 32 | 993 </div> |
| 994 | |
| 995 <div class=title> | |
| 996 <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000</p> | |
| 997 <p class=titleinfo> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
998 <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|1</a> |
| 32 | 999 <span class=b>Length:</span> 1045 |
| 1000 <span class=b>Number of Matches:</span> 1 | |
| 1001 </p> | |
| 1002 </div> | |
| 1003 | |
| 1004 | |
| 59 | 1005 <div class=hotspot id=hotspot3-3-1> |
| 32 | 1006 <p class=range> |
| 1007 <span class=range>Range 1: 2 to 18</span> | |
| 1008 </p> | |
| 1009 | |
| 1010 <table class=hotspotstable> | |
| 1011 <tr> | |
| 1012 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> | |
| 1013 </tr> | |
| 1014 <tr> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1015 <td>34.1929 bits (17)</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1016 <td>9.33411e-06</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1017 <td>17/17 (100%)</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1018 <td>0/17 (0%)</td> |
| 32 | 1019 <td>Plus/Plus</td> |
| 1020 </tr> | |
| 1021 </table> | |
| 1022 | |
| 1023 <pre class=alignmentgraphic>Query 4 GCGCGGTGTCATCTATG 20 | |
| 1024 ||||||||||||||||| | |
| 1025 Subject 2 GCGCGGTGTCATCTATG 18</pre> | |
| 1026 </div> | |
| 1027 | |
| 1028 </div> | |
| 1029 | |
| 1030 </div></div> | |
| 1031 </section> | |
| 1032 </section> | |
| 1033 | |
| 1034 <section class=match id=match4> | |
| 1035 | |
| 114 | 1036 <h2>Nucleotide Sequence (24 letters)</h2> |
| 32 | 1037 |
| 1038 <section class=header> | |
| 1039 | |
| 1040 <table class=headerdata> | |
| 114 | 1041 <tr><td class=param>Query number:</td><td>4</td></tr> |
| 1042 <tr><td class=param>Query ID:</td><td>Query_4</td></tr> | |
| 1043 <tr><td class=param>Definition line:</td><td>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> | |
| 1044 <tr><td class=param>Length:</td><td>24</td></tr> | |
| 32 | 1045 </table> |
| 1046 | |
| 1047 </section> | |
| 1048 | |
| 1049 <section> | |
| 114 | 1050 <h3>No Hits</h3> |
| 32 | 1051 <div class=grey> |
| 1052 <table class=headerdata> | |
| 1053 <tr><td class=param>Message:</td><td>No hits found</td></tr> | |
| 1054 </table> | |
| 1055 </div> | |
| 1056 </section> | |
| 1057 </section> | |
| 1058 | |
| 1059 <section class=match id=match5> | |
| 1060 | |
| 114 | 1061 <h2>Nucleotide Sequence (20 letters)</h2> |
| 32 | 1062 |
| 1063 <section class=header> | |
| 1064 | |
| 1065 <table class=headerdata> | |
| 114 | 1066 <tr><td class=param>Query number:</td><td>5</td></tr> |
| 1067 <tr><td class=param>Query ID:</td><td>Query_5</td></tr> | |
| 1068 <tr><td class=param>Definition line:</td><td>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> | |
| 1069 <tr><td class=param>Length:</td><td>20</td></tr> | |
| 32 | 1070 </table> |
| 1071 | |
| 1072 </section> | |
| 1073 | |
| 1074 <section> | |
| 114 | 1075 <h3>No Hits</h3> |
| 32 | 1076 <div class=grey> |
| 1077 <table class=headerdata> | |
| 1078 <tr><td class=param>Message:</td><td>No hits found</td></tr> | |
| 1079 </table> | |
| 1080 </div> | |
| 1081 </section> | |
| 1082 </section> | |
| 1083 | |
| 1084 <section class=match id=match6> | |
| 1085 | |
| 114 | 1086 <h2>Nucleotide Sequence (25 letters)</h2> |
| 32 | 1087 |
| 1088 <section class=header> | |
| 1089 | |
| 1090 <table class=headerdata> | |
| 114 | 1091 <tr><td class=param>Query number:</td><td>6</td></tr> |
| 1092 <tr><td class=param>Query ID:</td><td>Query_6</td></tr> | |
| 1093 <tr><td class=param>Definition line:</td><td>Probe|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> | |
| 1094 <tr><td class=param>Length:</td><td>25</td></tr> | |
| 32 | 1095 </table> |
| 1096 | |
| 1097 </section> | |
| 1098 | |
| 1099 | |
| 1100 <section class=graphics> | |
| 114 | 1101 <h3>Graphic Summary</h3> |
| 32 | 1102 |
| 1103 <div class=grey> | |
| 114 | 1104 <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4> |
| 32 | 1105 |
| 1106 <div class=defline id=defline6> | |
| 1107 Mouse-over to show defline and scores, click to show alignments | |
| 1108 </div> | |
| 1109 | |
| 1110 <div class=graphic> | |
| 114 | 1111 <h5 class=darkHeader>Color key for alignment scores</h5> |
| 32 | 1112 <div class=legend><div class=graphicrow> |
| 1113 <div class=graphicitem style="background-color: black"><40</div> | |
| 1114 <div class=graphicitem style="background-color: blue">40–50</div> | |
| 1115 <div class=graphicitem style="background-color: green">50–80</div> | |
| 1116 <div class=graphicitem style="background-color: magenta">80–200</div> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1117 <div class=graphicitem style="background-color: red">≥200</div> |
| 32 | 1118 </div></div> |
| 1119 <div style="clear: left"></div> | |
| 1120 | |
| 1121 <div class=tablewrapper> | |
| 1122 | |
| 1123 <div class=scale> | |
| 1124 <div>query:</div> | |
| 1125 <div class=graphicrow> | |
| 1126 <div> | |
| 77 | 1127 <div class=graphicitem style="width: 12%"> |
| 32 | 1128 <div>3</div> |
| 1129 </div> | |
| 77 | 1130 <div class=graphicitem style="width: 12%"> |
| 32 | 1131 <div>6</div> |
| 1132 </div> | |
| 77 | 1133 <div class=graphicitem style="width: 12%"> |
| 32 | 1134 <div>9</div> |
| 1135 </div> | |
| 77 | 1136 <div class=graphicitem style="width: 12%"> |
| 32 | 1137 <div>12</div> |
| 1138 </div> | |
| 77 | 1139 <div class=graphicitem style="width: 12%"> |
| 32 | 1140 <div>15</div> |
| 1141 </div> | |
| 77 | 1142 <div class=graphicitem style="width: 12%"> |
| 32 | 1143 <div>18</div> |
| 1144 </div> | |
| 77 | 1145 <div class=graphicitem style="width: 12%"> |
| 32 | 1146 <div>21</div> |
| 1147 </div> | |
| 77 | 1148 <div class=graphicitem style="width: 12%"> |
| 32 | 1149 <div>24</div> |
| 1150 </div> | |
| 77 | 1151 <div class=graphicitem style="width: 4%"> |
| 32 | 1152 <div>25</div> |
| 1153 </div> | |
| 1154 </div> | |
| 1155 </div> | |
| 1156 <div style="clear: left"></div> | |
| 1157 </div> | |
| 1158 | |
| 1159 <a class=matchresult | |
| 59 | 1160 href="#hit6-1" |
| 32 | 1161 onmouseover='document.getElementById("defline6").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"' |
| 1162 onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"' | |
| 1163 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"> | |
| 1164 <div class="matchrow graphicrow"> | |
| 1165 <div class="matchitem graphicitem" | |
| 77 | 1166 style="background-color: black; width: 88%"></div> |
| 32 | 1167 <div class="matchitem graphicitem" |
| 77 | 1168 style="background-color: transparent; width: 12%"></div> |
| 32 | 1169 </div> |
| 1170 </a> | |
| 1171 | |
| 1172 <a class=matchresult | |
| 59 | 1173 href="#hit6-2" |
| 32 | 1174 onmouseover='document.getElementById("defline6").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"' |
| 1175 onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"' | |
| 1176 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"> | |
| 1177 <div class="matchrow graphicrow"> | |
| 1178 <div class="matchitem graphicitem" | |
| 77 | 1179 style="background-color: black; width: 88%"></div> |
| 32 | 1180 <div class="matchitem graphicitem" |
| 77 | 1181 style="background-color: transparent; width: 12%"></div> |
| 32 | 1182 </div> |
| 1183 </a> | |
| 1184 | |
| 1185 </div> | |
| 1186 </div> | |
| 1187 </div> | |
| 1188 </section> | |
| 1189 | |
| 1190 | |
| 1191 | |
| 1192 <section class=descriptions> | |
| 114 | 1193 <h3>Descriptions</h3> |
| 32 | 1194 |
| 1195 <div class=grey><div class=white> | |
| 114 | 1196 <h5 class=darkHeader>Sequences producing significant alignments:</h5> |
| 32 | 1197 |
| 1198 <table class=descriptiontable> | |
| 1199 <col/><col/><col/><col/><col/><col/><col/> | |
| 1200 <tr> | |
| 1201 <th>Description</th> | |
| 1202 <th>Max score</th> | |
| 1203 <th>Total score</th> | |
| 1204 <th>Query cover</th> | |
| 1205 <th>E value</th> | |
| 1206 <th>Ident</th> | |
| 1207 <th>Accession</th> | |
| 1208 </tr> | |
| 1209 <tr> | |
| 59 | 1210 <td><div><a href="#hit6-1" |
| 32 | 1211 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000" |
| 59 | 1212 id="description6-1"> |
| 32 | 1213 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000 |
| 1214 </a></div></td> | |
| 1215 <td>36.2</td> | |
| 1216 <td>36.2</td> | |
| 1217 <td>88%</td> | |
| 1218 <td>3.148e-06</td> | |
| 1219 <td>95%</td> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1220 <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">7</a></td> |
| 32 | 1221 </tr> |
| 1222 <tr> | |
| 59 | 1223 <td><div><a href="#hit6-2" |
| 32 | 1224 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000" |
| 59 | 1225 id="description6-2"> |
| 32 | 1226 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000 |
| 1227 </a></div></td> | |
| 1228 <td>36.2</td> | |
| 1229 <td>36.2</td> | |
| 1230 <td>88%</td> | |
| 1231 <td>3.148e-06</td> | |
| 1232 <td>95%</td> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1233 <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">6</a></td> |
| 32 | 1234 </tr> |
| 1235 </table> | |
| 1236 | |
| 1237 </div></div> | |
| 1238 </section> | |
| 1239 | |
| 1240 | |
| 1241 | |
| 1242 <section class=alignments> | |
| 114 | 1243 <h3>Alignments</h3> |
| 32 | 1244 |
| 1245 <div class=grey><div class=white> | |
| 59 | 1246 <div class=alignment id=hit6-1> |
| 32 | 1247 |
| 1248 <div class=linkheader> | |
| 59 | 1249 <div class=right><a href="#description6-1">Descriptions</a></div> |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1250 <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">Gene Bank</a> |
| 32 | 1251 </div> |
| 1252 | |
| 1253 <div class=title> | |
| 1254 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p> | |
| 1255 <p class=titleinfo> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1256 <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|7</a> |
| 32 | 1257 <span class=b>Length:</span> 4983 |
| 1258 <span class=b>Number of Matches:</span> 1 | |
| 1259 </p> | |
| 1260 </div> | |
| 1261 | |
| 1262 | |
| 59 | 1263 <div class=hotspot id=hotspot6-1-1> |
| 32 | 1264 <p class=range> |
| 1265 <span class=range>Range 1: 2344 to 2365</span> | |
| 1266 </p> | |
| 1267 | |
| 1268 <table class=hotspotstable> | |
| 1269 <tr> | |
| 1270 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> | |
| 1271 </tr> | |
| 1272 <tr> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1273 <td>36.1753 bits (18)</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1274 <td>3.14801e-06</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1275 <td>21/22 (95%)</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1276 <td>0/22 (0%)</td> |
| 32 | 1277 <td>Plus/Plus</td> |
| 1278 </tr> | |
| 1279 </table> | |
| 1280 | |
| 1281 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCAC 22 | |
| 1282 |||||||||||||| ||||||| | |
| 1283 Subject 2344 ACATGAACAGCGCCCTGACCAC 2365</pre> | |
| 1284 </div> | |
| 1285 | |
| 1286 </div> | |
| 1287 | |
| 59 | 1288 <div class=alignment id=hit6-2> |
| 32 | 1289 |
| 1290 <div class=linkheader> | |
| 59 | 1291 <div class=right><a href="#description6-2">Descriptions</a></div> |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1292 <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">Gene Bank</a> |
| 32 | 1293 </div> |
| 1294 | |
| 1295 <div class=title> | |
| 1296 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p> | |
| 1297 <p class=titleinfo> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1298 <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|6</a> |
| 32 | 1299 <span class=b>Length:</span> 4180 |
| 1300 <span class=b>Number of Matches:</span> 1 | |
| 1301 </p> | |
| 1302 </div> | |
| 1303 | |
| 1304 | |
| 59 | 1305 <div class=hotspot id=hotspot6-2-1> |
| 32 | 1306 <p class=range> |
| 1307 <span class=range>Range 1: 1541 to 1562</span> | |
| 1308 </p> | |
| 1309 | |
| 1310 <table class=hotspotstable> | |
| 1311 <tr> | |
| 1312 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> | |
| 1313 </tr> | |
| 1314 <tr> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1315 <td>36.1753 bits (18)</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1316 <td>3.14801e-06</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1317 <td>21/22 (95%)</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1318 <td>0/22 (0%)</td> |
| 32 | 1319 <td>Plus/Plus</td> |
| 1320 </tr> | |
| 1321 </table> | |
| 1322 | |
| 1323 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCAC 22 | |
| 1324 |||||||||||||| ||||||| | |
| 1325 Subject 1541 ACATGAACAGCGCCCTGACCAC 1562</pre> | |
| 1326 </div> | |
| 1327 | |
| 1328 </div> | |
| 1329 | |
| 1330 </div></div> | |
| 1331 </section> | |
| 1332 </section> | |
| 1333 | |
| 1334 <section class=match id=match7> | |
| 1335 | |
| 114 | 1336 <h2>Nucleotide Sequence (74 letters)</h2> |
| 32 | 1337 |
| 1338 <section class=header> | |
| 1339 | |
| 1340 <table class=headerdata> | |
| 114 | 1341 <tr><td class=param>Query number:</td><td>7</td></tr> |
| 1342 <tr><td class=param>Query ID:</td><td>Query_7</td></tr> | |
| 1343 <tr><td class=param>Definition line:</td><td>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> | |
| 1344 <tr><td class=param>Length:</td><td>74</td></tr> | |
| 32 | 1345 </table> |
| 1346 | |
| 1347 </section> | |
| 1348 | |
| 1349 | |
| 1350 <section class=graphics> | |
| 114 | 1351 <h3>Graphic Summary</h3> |
| 32 | 1352 |
| 1353 <div class=grey> | |
| 114 | 1354 <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4> |
| 32 | 1355 |
| 1356 <div class=defline id=defline7> | |
| 1357 Mouse-over to show defline and scores, click to show alignments | |
| 1358 </div> | |
| 1359 | |
| 1360 <div class=graphic> | |
| 114 | 1361 <h5 class=darkHeader>Color key for alignment scores</h5> |
| 32 | 1362 <div class=legend><div class=graphicrow> |
| 1363 <div class=graphicitem style="background-color: black"><40</div> | |
| 1364 <div class=graphicitem style="background-color: blue">40–50</div> | |
| 1365 <div class=graphicitem style="background-color: green">50–80</div> | |
| 1366 <div class=graphicitem style="background-color: magenta">80–200</div> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1367 <div class=graphicitem style="background-color: red">≥200</div> |
| 32 | 1368 </div></div> |
| 1369 <div style="clear: left"></div> | |
| 1370 | |
| 1371 <div class=tablewrapper> | |
| 1372 | |
| 1373 <div class=scale> | |
| 1374 <div>query:</div> | |
| 1375 <div class=graphicrow> | |
| 1376 <div> | |
| 77 | 1377 <div class=graphicitem style="width: 10.8108108108%"> |
| 32 | 1378 <div>8</div> |
| 1379 </div> | |
| 77 | 1380 <div class=graphicitem style="width: 10.8108108108%"> |
| 32 | 1381 <div>16</div> |
| 1382 </div> | |
| 77 | 1383 <div class=graphicitem style="width: 10.8108108108%"> |
| 32 | 1384 <div>24</div> |
| 1385 </div> | |
| 77 | 1386 <div class=graphicitem style="width: 10.8108108108%"> |
| 32 | 1387 <div>32</div> |
| 1388 </div> | |
| 77 | 1389 <div class=graphicitem style="width: 10.8108108108%"> |
| 32 | 1390 <div>40</div> |
| 1391 </div> | |
| 77 | 1392 <div class=graphicitem style="width: 10.8108108108%"> |
| 32 | 1393 <div>48</div> |
| 1394 </div> | |
| 77 | 1395 <div class=graphicitem style="width: 10.8108108108%"> |
| 32 | 1396 <div>56</div> |
| 1397 </div> | |
| 77 | 1398 <div class=graphicitem style="width: 10.8108108108%"> |
| 32 | 1399 <div>64</div> |
| 1400 </div> | |
| 77 | 1401 <div class=graphicitem style="width: 10.8108108108%"> |
| 32 | 1402 <div>72</div> |
| 1403 </div> | |
| 77 | 1404 <div class=graphicitem style="width: 2.7027027027%"> |
| 32 | 1405 <div> </div> |
| 1406 <div class=lastlabel>74</div> | |
| 1407 </div> | |
| 1408 </div> | |
| 1409 </div> | |
| 1410 <div style="clear: left"></div> | |
| 1411 </div> | |
| 1412 | |
| 1413 <a class=matchresult | |
| 59 | 1414 href="#hit7-1" |
| 32 | 1415 onmouseover='document.getElementById("defline7").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"' |
| 1416 onmouseout='document.getElementById("defline7").innerHTML="Mouse-over to show defline and scores, click to show alignments"' | |
| 1417 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"> | |
| 1418 <div class="matchrow graphicrow"> | |
| 1419 <div class="matchitem graphicitem" | |
| 77 | 1420 style="background-color: green; width: 100%"></div> |
| 32 | 1421 </div> |
| 1422 </a> | |
| 1423 | |
| 1424 <a class=matchresult | |
| 59 | 1425 href="#hit7-2" |
| 32 | 1426 onmouseover='document.getElementById("defline7").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"' |
| 1427 onmouseout='document.getElementById("defline7").innerHTML="Mouse-over to show defline and scores, click to show alignments"' | |
| 1428 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"> | |
| 1429 <div class="matchrow graphicrow"> | |
| 1430 <div class="matchitem graphicitem" | |
| 77 | 1431 style="background-color: green; width: 100%"></div> |
| 32 | 1432 </div> |
| 1433 </a> | |
| 1434 | |
| 1435 </div> | |
| 1436 </div> | |
| 1437 </div> | |
| 1438 </section> | |
| 1439 | |
| 1440 | |
| 1441 | |
| 1442 <section class=descriptions> | |
| 114 | 1443 <h3>Descriptions</h3> |
| 32 | 1444 |
| 1445 <div class=grey><div class=white> | |
| 114 | 1446 <h5 class=darkHeader>Sequences producing significant alignments:</h5> |
| 32 | 1447 |
| 1448 <table class=descriptiontable> | |
| 1449 <col/><col/><col/><col/><col/><col/><col/> | |
| 1450 <tr> | |
| 1451 <th>Description</th> | |
| 1452 <th>Max score</th> | |
| 1453 <th>Total score</th> | |
| 1454 <th>Query cover</th> | |
| 1455 <th>E value</th> | |
| 1456 <th>Ident</th> | |
| 1457 <th>Accession</th> | |
| 1458 </tr> | |
| 1459 <tr> | |
| 59 | 1460 <td><div><a href="#hit7-1" |
| 32 | 1461 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000" |
| 59 | 1462 id="description7-1"> |
| 32 | 1463 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000 |
| 1464 </a></div></td> | |
| 1465 <td>67.9</td> | |
| 1466 <td>67.9</td> | |
| 1467 <td>100%</td> | |
| 1468 <td>3.564e-15</td> | |
| 1469 <td>86%</td> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1470 <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">7</a></td> |
| 32 | 1471 </tr> |
| 1472 <tr> | |
| 59 | 1473 <td><div><a href="#hit7-2" |
| 32 | 1474 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000" |
| 59 | 1475 id="description7-2"> |
| 32 | 1476 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000 |
| 1477 </a></div></td> | |
| 1478 <td>67.9</td> | |
| 1479 <td>67.9</td> | |
| 1480 <td>100%</td> | |
| 1481 <td>3.564e-15</td> | |
| 1482 <td>86%</td> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1483 <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">6</a></td> |
| 32 | 1484 </tr> |
| 1485 </table> | |
| 1486 | |
| 1487 </div></div> | |
| 1488 </section> | |
| 1489 | |
| 1490 | |
| 1491 | |
| 1492 <section class=alignments> | |
| 114 | 1493 <h3>Alignments</h3> |
| 32 | 1494 |
| 1495 <div class=grey><div class=white> | |
| 59 | 1496 <div class=alignment id=hit7-1> |
| 32 | 1497 |
| 1498 <div class=linkheader> | |
| 59 | 1499 <div class=right><a href="#description7-1">Descriptions</a></div> |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1500 <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">Gene Bank</a> |
| 32 | 1501 </div> |
| 1502 | |
| 1503 <div class=title> | |
| 1504 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p> | |
| 1505 <p class=titleinfo> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1506 <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|7</a> |
| 32 | 1507 <span class=b>Length:</span> 4983 |
| 1508 <span class=b>Number of Matches:</span> 1 | |
| 1509 </p> | |
| 1510 </div> | |
| 1511 | |
| 1512 | |
| 59 | 1513 <div class=hotspot id=hotspot7-1-1> |
| 32 | 1514 <p class=range> |
| 1515 <span class=range>Range 1: 2319 to 2392</span> | |
| 1516 </p> | |
| 1517 | |
| 1518 <table class=hotspotstable> | |
| 1519 <tr> | |
| 1520 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> | |
| 1521 </tr> | |
| 1522 <tr> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1523 <td>67.8929 bits (34)</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1524 <td>3.56369e-15</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1525 <td>64/74 (86%)</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1526 <td>0/74 (0%)</td> |
| 32 | 1527 <td>Plus/Plus</td> |
| 1528 </tr> | |
| 1529 </table> | |
| 1530 | |
|
68
fa8a93bdefd7
fix bug in calculations of alignment end
Jan Kanis <jan.code@jankanis.nl>
parents:
59
diff
changeset
|
1531 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTG 60 |
|
fa8a93bdefd7
fix bug in calculations of alignment end
Jan Kanis <jan.code@jankanis.nl>
parents:
59
diff
changeset
|
1532 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | |
|
fa8a93bdefd7
fix bug in calculations of alignment end
Jan Kanis <jan.code@jankanis.nl>
parents:
59
diff
changeset
|
1533 Subject 2319 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTC 2378</pre> |
|
fa8a93bdefd7
fix bug in calculations of alignment end
Jan Kanis <jan.code@jankanis.nl>
parents:
59
diff
changeset
|
1534 <pre class=alignmentgraphic>Query 61 TTCGCAGTCCAGAA 74 |
|
fa8a93bdefd7
fix bug in calculations of alignment end
Jan Kanis <jan.code@jankanis.nl>
parents:
59
diff
changeset
|
1535 ||||| |||||||| |
|
fa8a93bdefd7
fix bug in calculations of alignment end
Jan Kanis <jan.code@jankanis.nl>
parents:
59
diff
changeset
|
1536 Subject 2379 TTCGCCGTCCAGAA 2392</pre> |
| 32 | 1537 </div> |
| 1538 | |
| 1539 </div> | |
| 1540 | |
| 59 | 1541 <div class=alignment id=hit7-2> |
| 32 | 1542 |
| 1543 <div class=linkheader> | |
| 59 | 1544 <div class=right><a href="#description7-2">Descriptions</a></div> |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1545 <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">Gene Bank</a> |
| 32 | 1546 </div> |
| 1547 | |
| 1548 <div class=title> | |
| 1549 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p> | |
| 1550 <p class=titleinfo> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1551 <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|6</a> |
| 32 | 1552 <span class=b>Length:</span> 4180 |
| 1553 <span class=b>Number of Matches:</span> 1 | |
| 1554 </p> | |
| 1555 </div> | |
| 1556 | |
| 1557 | |
| 59 | 1558 <div class=hotspot id=hotspot7-2-1> |
| 32 | 1559 <p class=range> |
|
70
0ef071bba164
Modify test data to include a negative frame sequence that is split in multiple lines
Jan Kanis <jan.code@jankanis.nl>
parents:
68
diff
changeset
|
1560 <span class=range>Range 1: 1589 to 1516</span> |
| 32 | 1561 </p> |
| 1562 | |
| 1563 <table class=hotspotstable> | |
| 1564 <tr> | |
| 1565 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> | |
| 1566 </tr> | |
| 1567 <tr> | |
|
118
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1568 <td>67.8929 bits (34)</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1569 <td>3.56369e-15</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1570 <td>64/74 (86%)</td> |
|
7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents:
114
diff
changeset
|
1571 <td>0/74 (0%)</td> |
|
70
0ef071bba164
Modify test data to include a negative frame sequence that is split in multiple lines
Jan Kanis <jan.code@jankanis.nl>
parents:
68
diff
changeset
|
1572 <td>Plus/Minus</td> |
| 32 | 1573 </tr> |
| 1574 </table> | |
| 1575 | |
|
68
fa8a93bdefd7
fix bug in calculations of alignment end
Jan Kanis <jan.code@jankanis.nl>
parents:
59
diff
changeset
|
1576 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTG 60 |
|
fa8a93bdefd7
fix bug in calculations of alignment end
Jan Kanis <jan.code@jankanis.nl>
parents:
59
diff
changeset
|
1577 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | |
|
70
0ef071bba164
Modify test data to include a negative frame sequence that is split in multiple lines
Jan Kanis <jan.code@jankanis.nl>
parents:
68
diff
changeset
|
1578 Subject 1589 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTC 1530</pre> |
|
68
fa8a93bdefd7
fix bug in calculations of alignment end
Jan Kanis <jan.code@jankanis.nl>
parents:
59
diff
changeset
|
1579 <pre class=alignmentgraphic>Query 61 TTCGCAGTCCAGAA 74 |
|
fa8a93bdefd7
fix bug in calculations of alignment end
Jan Kanis <jan.code@jankanis.nl>
parents:
59
diff
changeset
|
1580 ||||| |||||||| |
|
70
0ef071bba164
Modify test data to include a negative frame sequence that is split in multiple lines
Jan Kanis <jan.code@jankanis.nl>
parents:
68
diff
changeset
|
1581 Subject 1529 TTCGCCGTCCAGAA 1516</pre> |
| 32 | 1582 </div> |
| 1583 | |
| 1584 </div> | |
| 1585 | |
| 1586 </div></div> | |
| 1587 </section> | |
| 1588 </section> | |
| 1589 | |
| 1590 </div> | |
| 1591 | |
| 1592 <footer> | |
|
33
3bb5da68305e
add test update script, add url to github page
Jan Kanis <jan.code@jankanis.nl>
parents:
32
diff
changeset
|
1593 This page was generated by <a href="https://github.com/thehyve/blast2html/">blast2html</a>. |
| 32 | 1594 </footer> |
| 1595 </body> | |
| 1596 </html> | |
| 1597 |