Mercurial > repos > jbarberoaparicio > roary

changeset 25:1b990096bb59 draft

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Uploaded
author jbarberoaparicio
date Thu, 18 Apr 2019 05:23:39 -0400
parents dab8f50594d8
children 6fd4d3fce229
files roary/myTools/roary_tool.xml
diffstat 1 files changed, 2 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/roary/myTools/roary_tool.xml	Thu Apr 18 05:19:11 2019 -0400
+++ b/roary/myTools/roary_tool.xml	Thu Apr 18 05:23:39 2019 -0400
@@ -7,9 +7,8 @@
     
     <command detect_errors="exit_code"><![CDATA[
         
-        #for $counter, $gff in enumerate($gff_input.gffs)
-        #  sample="$(cut -d'/' -f6 <<<'$gff')" &&
-        #  cp $gff ${sample}.gff &&   
+        #for $counter, $gff in enumerate($gff_input.gffs) sample="$(cut -d'/' -f6 <<<'$gff')" && 
+            cp $gff ${sample}.gff &&
         #end for
                 
         roary