Mercurial > repos > jbarberoaparicio > roary

changeset 7:2d4cb3b9d2d1 draft

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Uploaded
author jbarberoaparicio
date Wed, 17 Apr 2019 05:28:43 -0400
parents f7827647d498
children 2e48cdd5ffff
files roary/myTools/roary_tool.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/roary/myTools/roary_tool.xml	Wed Apr 17 05:25:48 2019 -0400
+++ b/roary/myTools/roary_tool.xml	Wed Apr 17 05:28:43 2019 -0400
@@ -7,8 +7,8 @@
     
     <command detect_errors="exit_code"><![CDATA[
         
-        #for $counter, $gff in enumerate($gff_input)
-          cp $gff sample${gff}.gff &&
+        #for $counter, $gff in enumerate($gff_input.gffs)
+          cp $gff temp${counter}.gff &&
         #end for
                 
         roary
@@ -23,7 +23,7 @@
           -t '$advanced.trans_tab'
           -iv '$advanced.mcl'
           
-          sample*.gff
+          temp*.gff
           
     ]]></command>