Mercurial > repos > jbarberoaparicio > roary

changeset 8:2e48cdd5ffff draft

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Uploaded
author jbarberoaparicio
date Wed, 17 Apr 2019 05:31:47 -0400
parents 2d4cb3b9d2d1
children cc2db15c56a5
files roary/myTools/roary_tool.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/roary/myTools/roary_tool.xml	Wed Apr 17 05:28:43 2019 -0400
+++ b/roary/myTools/roary_tool.xml	Wed Apr 17 05:31:47 2019 -0400
@@ -8,7 +8,7 @@
     <command detect_errors="exit_code"><![CDATA[
         
         #for $counter, $gff in enumerate($gff_input.gffs)
-          cp $gff temp${counter}.gff &&
+          cp $gff sample${gff}.gff &&
         #end for
                 
         roary
@@ -23,7 +23,7 @@
           -t '$advanced.trans_tab'
           -iv '$advanced.mcl'
           
-          temp*.gff
+          sample*.gff
           
     ]]></command>