Mercurial > repos > mcharles > genephys
comparison genephys/extractgenomicsequencefromsegment.xml @ 0:448b10ffb095 draft
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| author | mcharles |
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| date | Tue, 12 Aug 2014 05:49:33 -0400 |
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| -1:000000000000 | 0:448b10ffb095 |
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| 1 <tool id="extractgenomicsequencefromsegment" name="extractgenomicsequencefromsegment" version="0.01"> | |
| 2 <description>Extract the genomic sequence corresponding to a genomic segment (format : chr:start..stop)</description> | |
| 3 <command interpreter="perl"> | |
| 4 extractgenomicsequencefromsegment.pl $input_segment $input_assembly > $output_file | |
| 5 </command> | |
| 6 <inputs> | |
| 7 <param name="input_segment" type="data" format="txt" label="Select a suitable input SEGMENT file from your history"/> | |
| 8 <param name="input_assembly" type="data" format="fasta" label="Select a suitable input ASSEMBLY file from your history"/> | |
| 9 </inputs> | |
| 10 <outputs> | |
| 11 <data name="output_file" format="fasta" label="${tool.name} on ${on_string}"/> | |
| 12 </outputs> | |
| 13 | |
| 14 <help> | |
| 15 | |
| 16 | |
| 17 | |
| 18 </help> | |
| 19 </tool> |