Mercurial > repos > mcharles > genephys
view genephys/extractgenomicsequencefromsegment.xml @ 0:448b10ffb095 draft
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author | mcharles |
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date | Tue, 12 Aug 2014 05:49:33 -0400 |
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<tool id="extractgenomicsequencefromsegment" name="extractgenomicsequencefromsegment" version="0.01"> <description>Extract the genomic sequence corresponding to a genomic segment (format : chr:start..stop)</description> <command interpreter="perl"> extractgenomicsequencefromsegment.pl $input_segment $input_assembly > $output_file </command> <inputs> <param name="input_segment" type="data" format="txt" label="Select a suitable input SEGMENT file from your history"/> <param name="input_assembly" type="data" format="fasta" label="Select a suitable input ASSEMBLY file from your history"/> </inputs> <outputs> <data name="output_file" format="fasta" label="${tool.name} on ${on_string}"/> </outputs> <help> </help> </tool>