diff genephys/extractgenomicsequencefromsegment.xml @ 0:448b10ffb095 draft

Uploaded
author mcharles
date Tue, 12 Aug 2014 05:49:33 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/genephys/extractgenomicsequencefromsegment.xml	Tue Aug 12 05:49:33 2014 -0400
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+<tool id="extractgenomicsequencefromsegment" name="extractgenomicsequencefromsegment" version="0.01">
+<description>Extract the genomic sequence corresponding to a genomic segment (format : chr:start..stop)</description>
+<command interpreter="perl">
+    extractgenomicsequencefromsegment.pl $input_segment $input_assembly > $output_file 
+</command>
+<inputs>
+<param name="input_segment"  type="data" format="txt" label="Select a suitable input SEGMENT file from your history"/>
+<param name="input_assembly"  type="data" format="fasta" label="Select a suitable input ASSEMBLY file from your history"/>
+</inputs>
+<outputs>
+ <data name="output_file" format="fasta" label="${tool.name} on ${on_string}"/>
+</outputs>
+
+<help>
+
+
+
+</help>
+</tool>