Mercurial > repos > mcharles > genephys
diff genephys/extractgenomicsequencefromsegment.xml @ 0:448b10ffb095 draft
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author | mcharles |
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date | Tue, 12 Aug 2014 05:49:33 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/genephys/extractgenomicsequencefromsegment.xml Tue Aug 12 05:49:33 2014 -0400 @@ -0,0 +1,19 @@ +<tool id="extractgenomicsequencefromsegment" name="extractgenomicsequencefromsegment" version="0.01"> +<description>Extract the genomic sequence corresponding to a genomic segment (format : chr:start..stop)</description> +<command interpreter="perl"> + extractgenomicsequencefromsegment.pl $input_segment $input_assembly > $output_file +</command> +<inputs> +<param name="input_segment" type="data" format="txt" label="Select a suitable input SEGMENT file from your history"/> +<param name="input_assembly" type="data" format="fasta" label="Select a suitable input ASSEMBLY file from your history"/> +</inputs> +<outputs> + <data name="output_file" format="fasta" label="${tool.name} on ${on_string}"/> +</outputs> + +<help> + + + +</help> +</tool>