Mercurial > repos > mcharles > genephys
annotate genephys/extractgenomicsequencefromsegment.xml @ 0:448b10ffb095 draft
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author | mcharles |
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date | Tue, 12 Aug 2014 05:49:33 -0400 |
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0 | 1 <tool id="extractgenomicsequencefromsegment" name="extractgenomicsequencefromsegment" version="0.01"> |
2 <description>Extract the genomic sequence corresponding to a genomic segment (format : chr:start..stop)</description> | |
3 <command interpreter="perl"> | |
4 extractgenomicsequencefromsegment.pl $input_segment $input_assembly > $output_file | |
5 </command> | |
6 <inputs> | |
7 <param name="input_segment" type="data" format="txt" label="Select a suitable input SEGMENT file from your history"/> | |
8 <param name="input_assembly" type="data" format="fasta" label="Select a suitable input ASSEMBLY file from your history"/> | |
9 </inputs> | |
10 <outputs> | |
11 <data name="output_file" format="fasta" label="${tool.name} on ${on_string}"/> | |
12 </outputs> | |
13 | |
14 <help> | |
15 | |
16 | |
17 | |
18 </help> | |
19 </tool> |