annotate genephys/extractgenomicsequencefromsegment.xml @ 0:448b10ffb095 draft

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author mcharles
date Tue, 12 Aug 2014 05:49:33 -0400
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1 <tool id="extractgenomicsequencefromsegment" name="extractgenomicsequencefromsegment" version="0.01">
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2 <description>Extract the genomic sequence corresponding to a genomic segment (format : chr:start..stop)</description>
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3 <command interpreter="perl">
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4 extractgenomicsequencefromsegment.pl $input_segment $input_assembly > $output_file
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5 </command>
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6 <inputs>
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7 <param name="input_segment" type="data" format="txt" label="Select a suitable input SEGMENT file from your history"/>
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8 <param name="input_assembly" type="data" format="fasta" label="Select a suitable input ASSEMBLY file from your history"/>
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9 </inputs>
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10 <outputs>
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11 <data name="output_file" format="fasta" label="${tool.name} on ${on_string}"/>
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12 </outputs>
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13
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14 <help>
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15
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18 </help>
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19 </tool>