Mercurial > repos > mcharles > genephys
comparison genephys/MergeBlastResults.xml @ 3:8dfa09868059 draft
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| author | mcharles |
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| date | Fri, 24 Oct 2014 05:54:20 -0400 |
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| 2:c52e74b98773 | 3:8dfa09868059 |
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| 1 <tool id="MergeBlastResults" name="MergeBlastResults" version="1.03"> | |
| 2 <description>Parse Blast result (Tabular) to merge feature</description> | |
| 3 <command interpreter="perl"> | |
| 4 MergeBlastResults.pl -input_blasttab_file $input_blast -output_joinmatch_file $output_merge -log_file $log_file -max_overlap_fraction $max_overlap_fraction -max_overlap_length_ignored $max_overlap_length_ignored -header $header | |
| 5 </command> | |
| 6 <inputs> | |
| 7 <param name="input_blast" type="data" format="txt" label="Select a suitable input BLASTTAB (10 columns) file from your history"/> | |
| 8 <param name="max_overlap_fraction" type="float" value="0.5" label="Maximum overlap fraction between two match (other wise considered as duplicated)"/> | |
| 9 <param name="max_overlap_length_ignored" type="integer" value="3" label="Maximum overlap length ignored"/> | |
| 10 <param name="header" type="text" value="" label="Header for the blast file"/> | |
| 11 </inputs> | |
| 12 <outputs> | |
| 13 <data name="output_merge" format="txt" label="${tool.name} MERGE on ${on_string}"/> | |
| 14 <data name="log_file" format="txt" label="${tool.name} LOG on ${on_string}"/> | |
| 15 </outputs> | |
| 16 | |
| 17 <help> | |
| 18 | |
| 19 </help> | |
| 20 </tool> | |
| 21 |