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3
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1 <tool id="MergeBlastResults" name="MergeBlastResults" version="1.03">
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2 <description>Parse Blast result (Tabular) to merge feature</description>
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3 <command interpreter="perl">
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4 MergeBlastResults.pl -input_blasttab_file $input_blast -output_joinmatch_file $output_merge -log_file $log_file -max_overlap_fraction $max_overlap_fraction -max_overlap_length_ignored $max_overlap_length_ignored -header $header
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5 </command>
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6 <inputs>
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7 <param name="input_blast" type="data" format="txt" label="Select a suitable input BLASTTAB (10 columns) file from your history"/>
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8 <param name="max_overlap_fraction" type="float" value="0.5" label="Maximum overlap fraction between two match (other wise considered as duplicated)"/>
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9 <param name="max_overlap_length_ignored" type="integer" value="3" label="Maximum overlap length ignored"/>
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10 <param name="header" type="text" value="" label="Header for the blast file"/>
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11 </inputs>
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12 <outputs>
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13 <data name="output_merge" format="txt" label="${tool.name} MERGE on ${on_string}"/>
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14 <data name="log_file" format="txt" label="${tool.name} LOG on ${on_string}"/>
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15 </outputs>
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16
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17 <help>
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18
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19 </help>
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20 </tool>
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21
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