<tool id="MergeBlastResults" name="MergeBlastResults" version="1.03">
<description>Parse Blast result (Tabular) to merge feature</description>
<command interpreter="perl">
    MergeBlastResults.pl -input_blasttab_file $input_blast -output_joinmatch_file $output_merge -log_file $log_file -max_overlap_fraction $max_overlap_fraction -max_overlap_length_ignored $max_overlap_length_ignored -header $header
</command>
<inputs>
	<param name="input_blast"  type="data" format="txt" label="Select a suitable input BLASTTAB (10 columns) file from your history"/>
	<param name="max_overlap_fraction" type="float" value="0.5" label="Maximum overlap fraction between two match (other wise considered as duplicated)"/>
	<param name="max_overlap_length_ignored" type="integer" value="3" label="Maximum overlap length ignored"/>
	<param name="header" type="text" value="" label="Header for the blast file"/>
</inputs>
<outputs>
	<data name="output_merge" format="txt" label="${tool.name} MERGE on ${on_string}"/>
	<data name="log_file" format="txt" label="${tool.name} LOG on ${on_string}"/>
</outputs>

<help>

</help>
</tool>