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annotate macros.xml @ 4:261464223fa3 draft

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planemo upload for repository https://github.com/goeckslab/tools-mti commit ed91d9e0dd189986b5c31fe23f5f78bd8765d862
author goeckslab
date Tue, 06 Sep 2022 23:18:12 +0000
parents aba3655fdef0
children 3a916c4e9f5f
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928db0f952e3 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit a4349062e9177b5e60fb7c49115c57299e0d648d-dirty"
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1 <?xml version="1.0"?>
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2 <macros>
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3 <xml name="requirements">
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4 <requirements>
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261464223fa3 planemo upload for repository https://github.com/goeckslab/tools-mti commit ed91d9e0dd189986b5c31fe23f5f78bd8765d862
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5 <!--
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6 <requirement type="package" version="3.9">python</requirement>
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7 <requirement type="package" version="0.18.0">scikit-image</requirement>
aba3655fdef0 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
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8 <requirement type="package">h5py</requirement>
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9 <requirement type="package">pandas</requirement>
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10 <requirement type="package">numpy</requirement>
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11 <requirement type="package">pathlib</requirement>
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12 -->
261464223fa3 planemo upload for repository https://github.com/goeckslab/tools-mti commit ed91d9e0dd189986b5c31fe23f5f78bd8765d862
goeckslab
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13 <container type="docker">labsyspharm/quantification:@TOOL_VERSION@</container>
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14 </requirements>
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15 </xml>
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17 <xml name="version_cmd">
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18 <version_command>echo @TOOL_VERSION@</version_command>
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19 </xml>
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20 <xml name="citations">
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21 <citations>
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22 </citations>
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23 </xml>
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24
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25 <token name="@TOOL_VERSION@">1.5.1</token>
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26 <token name="@VERSION_SUFFIX@">0</token>
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27 <token name="@CMD_BEGIN@"><![CDATA[
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28 QUANT_PATH='' &&
261464223fa3 planemo upload for repository https://github.com/goeckslab/tools-mti commit ed91d9e0dd189986b5c31fe23f5f78bd8765d862
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29 if [ -f '/app/CommandSingleCellExtraction.py' ]; then
261464223fa3 planemo upload for repository https://github.com/goeckslab/tools-mti commit ed91d9e0dd189986b5c31fe23f5f78bd8765d862
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30 export QUANT_PATH='python /app/CommandSingleCellExtraction.py';
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31 else
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261464223fa3 planemo upload for repository https://github.com/goeckslab/tools-mti commit ed91d9e0dd189986b5c31fe23f5f78bd8765d862
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32 export QUANT_PATH='CommandSingleCellExtraction.py';
261464223fa3 planemo upload for repository https://github.com/goeckslab/tools-mti commit ed91d9e0dd189986b5c31fe23f5f78bd8765d862
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33 fi &&
261464223fa3 planemo upload for repository https://github.com/goeckslab/tools-mti commit ed91d9e0dd189986b5c31fe23f5f78bd8765d862
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34 \$QUANT_PATH
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35 ]]></token>
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36 </macros>