Mercurial > repos > petr-novak > various_galaxy_tools

annotate gff2tabular.xml @ 3:1069776f7ae2 draft default tip

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planemo upload for repository https://github.com/kavonrtep/galaxy_packages commit 3b9f93ed06cc32dbfa271789739e7a1e8fac528c
author petr-novak
date Tue, 30 Apr 2024 08:27:27 +0000
parents 90c46e40d222
children
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1 <tool id="gff2tabular" name="GFF to Tabular" version="0.1.0">
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2 <description>converter</description>
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3 <requirements>
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4 <requirement type="package">R</requirement>
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5 <requirement type="package">bioconductor-rtracklayer</requirement>
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6 </requirements>
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90c46e40d222 planemo upload for repository https://github.com/kavonrtep/galaxy_packages commit 248ffeb6792d5807820b664eae3e88306f3f395e-dirty
petr-novak
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7 <required_files>
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8 <include type="literal" path="gff2tabular.R"/>
90c46e40d222 planemo upload for repository https://github.com/kavonrtep/galaxy_packages commit 248ffeb6792d5807820b664eae3e88306f3f395e-dirty
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9 </required_files>
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10 <command detect_errors="exit_code"><![CDATA[
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11 Rscript ${__tool_directory__}/gff2tabular.R '$inputgff' '$output'
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12 ]]></command>
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13 <inputs>
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14 <param type="data" name="inputgff" format="gff" />
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15 </inputs>
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16 <outputs>
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17 <data name="output" format="tabular" />
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18 </outputs>
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19 <help><![CDATA[
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20 Convert gff2/gff3 to tab delimited file
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21 ]]></help>
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22 </tool>