Mercurial > repos > petr-novak > various_galaxy_tools

diff gff2tabular.xml @ 0:696e702ebf74 draft

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"planemo upload commit 0f6eca49bafc3c946189d793161a7f81d595e1a1-dirty"
author petr-novak
date Mon, 09 May 2022 08:26:30 +0000
parents
children 90c46e40d222
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/gff2tabular.xml	Mon May 09 08:26:30 2022 +0000
@@ -0,0 +1,19 @@
+<tool id="gff2tabular" name="GFF to Tabular" version="0.1.0">
+    <description>converter</description>
+    <requirements>
+        <requirement type="package">R</requirement>
+        <requirement type="package">bioconductor-rtracklayer</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        Rscript ${__tool_directory__}/gff2tabular.R '$inputgff' '$output'
+    ]]></command>
+    <inputs>
+      <param type="data" name="inputgff" format="gff" />
+    </inputs>
+    <outputs>
+        <data name="output" format="tabular" />
+    </outputs>
+    <help><![CDATA[
+        Convert gff2/gff3 to tab delimited file
+    ]]></help>
+</tool>