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comparison env/lib/python3.7/site-packages/cwltool/tests/seqtk_seq.cwl @ 2:6af9afd405e9 draft

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"planemo upload commit 0a63dd5f4d38a1f6944587f52a8cd79874177fc1"
author shellac
date Thu, 14 May 2020 14:56:58 -0400
parents 26e78fe6e8c4
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1:75ca89e9b81c 2:6af9afd405e9
1 #!/usr/bin/env cwl-runner
2 cwlVersion: v1.0
3 class: CommandLineTool
4 id: "seqtk_seq"
5 doc: "Convert to FASTA (seqtk)"
6 inputs:
7 - id: input1
8 type: File
9 inputBinding:
10 position: 1
11 prefix: "-a"
12 outputs:
13 - id: output1
14 type: File
15 outputBinding:
16 glob: out
17 baseCommand: ["seqtk", "seq"]
18 arguments: []
19 stdout: out
20 hints:
21 SoftwareRequirement:
22 packages:
23 - package: seqtk
24 version:
25 - r93