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view env/lib/python3.7/site-packages/cwltool/tests/seqtk_seq.cwl @ 2:6af9afd405e9 draft

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author shellac
date Thu, 14 May 2020 14:56:58 -0400
parents 26e78fe6e8c4
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#!/usr/bin/env cwl-runner
cwlVersion: v1.0
class: CommandLineTool
id: "seqtk_seq"
doc: "Convert to FASTA (seqtk)"
inputs:
  - id: input1
    type: File
    inputBinding:
      position: 1
      prefix: "-a"
outputs:
  - id: output1
    type: File
    outputBinding:
      glob: out
baseCommand: ["seqtk", "seq"]
arguments: []
stdout: out
hints:
  SoftwareRequirement:
    packages:
    - package: seqtk
      version:
      - r93