Mercurial > repos > timpalpant > java_genomics_toolkit

annotate galaxy-conf/LogTransform.xml @ 25:b43c420a6135 draft default tip

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Incorporate fix: https://github.com/timpalpant/java-genomics-toolkit/commit/9a6c61b7c6b8d85a1cd3f595eed657a537b85dc9
author timpalpant
date Sat, 09 Feb 2019 14:02:24 -0500
parents 9d56b5b85740
children
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20
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1 <tool id="WigLogTransform" name="Log transform" version="1.1.0">
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2 <description>a (Big)Wig file</description>
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b43c420a6135 Incorporate fix: https://github.com/timpalpant/java-genomics-toolkit/commit/9a6c61b7c6b8d85a1cd3f595eed657a537b85dc9
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3 <command interpreter="bash">galaxyToolRunner.sh wigmath.LogTransform -i $input -b $base -o $output</command>
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4 <inputs>
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5 <param format="bigwig,wig" name="input" type="data" label="(Big)Wig file" />
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6 <param name="base" type="integer" value="2" label="Logarithm base" />
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7 </inputs>
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8 <outputs>
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9 <data format="wig" name="output" metadata_source="input" />
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10 </outputs>
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11 <tests>
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12 <test>
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13 <param name="input" value="wigmath1.wig"/>
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14 <param name="base" value="2"/>
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15 <output name="output" file="logger1.wig"/>
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16 </test>
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17 <test>
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18 <param name="input" value="wigmath2.wig"/>
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19 <param name="base" value="3"/>
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20 <output name="output" file="logger2.wig"/>
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21 </test>
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22 <test>
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23 <param name="input" value="wigmath3.wig"/>
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24 <param name="base" value="10"/>
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25 <output name="output" file="logger3.wig"/>
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26 </test>
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27 <test>
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28 <param name="input" value="wigmath1.bw"/>
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29 <param name="base" value="2"/>
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30 <output name="output" file="logger4.wig"/>
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31 </test>
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32 <test>
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33 <param name="input" value="wigmath2.bw"/>
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34 <param name="base" value="3"/>
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35 <output name="output" file="logger5.wig"/>
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36 </test>
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37 <test>
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38 <param name="input" value="wigmath3.bw"/>
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39 <param name="base" value="10"/>
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40 <output name="output" file="logger6.wig"/>
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41 </test>
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42 </tests>
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43
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44 <help>
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45
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46 .. class:: infomark
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47
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48 **TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in Wig or BigWig format. Use "edit attributes" to set the correct format if it was not detected correctly.
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49
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50 </help>
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51 </tool>