|
6
|
1 <tool id="catdc" name="Concatenate datasets (in docker)" version="2.12">
|
|
2
|
2 <description>tail-to-head</description>
|
|
|
3 <requirements>
|
|
4
|
4 <container type="docker">triasteran/bowite0127:latest</container>
|
|
2
|
5 </requirements>
|
|
|
6 <command>
|
|
|
7 echo "Galaxy slots passed through contain as \$GALAXY_SLOTS";
|
|
|
8 cat $input1
|
|
|
9 #for $q in $queries
|
|
|
10 ${q.input2}
|
|
|
11 #end for
|
|
|
12 > $out_file1;
|
|
|
13 echo "Work dir output" > working_file
|
|
6
|
14 bowtie --version > $out_file1
|
|
|
15 python2 --version > $out_file1
|
|
|
16 bowtie-build --version $out_file1
|
|
2
|
17 </command>
|
|
|
18 <inputs>
|
|
|
19 <param name="input1" type="data" label="Concatenate Dataset"/>
|
|
|
20 <repeat name="queries" title="Dataset">
|
|
|
21 <param name="input2" type="data" label="Select" />
|
|
|
22 </repeat>
|
|
|
23 </inputs>
|
|
|
24 <outputs>
|
|
|
25 <data name="out_file1" format="input" metadata_source="input1"/>
|
|
|
26 <data name="out_file2" format="txt" from_work_dir="working_file" />
|
|
|
27 </outputs>
|
|
|
28 <help>
|
|
|
29 </help>
|
|
|
30 </tool>
|
