Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics

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First commit of old repositories
author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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1 #
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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2 # new genestats file
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3 #
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4 splice3 10
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5 ENSE00000673410 TCCCACATAGATCA
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6 ENSE00000673409 TATCCTGCAGTATG
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7 ENSE00000673408 TTTGCTATAGATTA
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8 ENSE00000673407 GGTTTTTCAGTTGC
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9 ENSE00000401072 CTCCCATTAGGGTT
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10 ENSE00000868868 TTATTTCTAGCTGA
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11 ENSE00000401061 CTTTGGTTAGGCAG
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12 ENSE00000673400 GTTCTCCCAGGCCT
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13 ENSE00000673402 TGTTTTATAGGGAT
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14 ENSE00000673403 CTTCTTTCAGAATG
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15 ENSE00000868865 ATTATCTTAGTTTC
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16 ENSE00000662824 ATTTTTTTAGTGGA
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17 ENSE00000662823 TCATTTTTAGGAAC
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18 ENSE00000662822 CAAATTTCAGCCAA
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19 ENSE00000662821 TATTCTACAGGAAG
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20 ENSE00000662820 TATTTGGCAGCCGT
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21 ENSE00000662819 TTTCTTACAGATTA
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22 ENSE00000814444 ATTTTTAAAGCATT
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23 ENSE00000814445 TTTTTTCCAGGGAC
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24 ENSE00000814446 CTCTGTCTAGTTTC
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25 ENSE00000814447 CTGCTTTTAGTCTC
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26 ENSE00000814448 TGGATTTCAGTTTC
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27 ENSE00000789672 TGGCATTTAGAAAT
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28 ENSE00000789671 TTGTCCTCAGATTT
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29 ENSE00000814451 TTTCGGGTAGATCA
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30 ENSE00000814452 TTGCTCCTAGGTTT
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31 ENSE00000789668 TTCCCTACAGGCGA
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32 ENSE00000789652 TTCTTTGCAGTTAT
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33 ENSE00000789653 ATTCATTTAGGCAG
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34 ENSE00000789654 TTTGGATCAGGATA
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35 ENSE00000789655 TTTATTTTAGGAAT
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36 ENSE00000789656 CCCTTCCCAGCAAG
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37 ENSE00000789657 TACATGTAAGACCT
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38 ENSE00000789658 TTCCCTGCAGGATA
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39 ENSE00000789659 TTTTGATTAGGATG
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40 ENSE00000789660 TATATTGCAGATAT
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41 ENSE00000789661 CTTTTTCCAGATAA
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42 ENSE00000789662 TTTATTTCAGCTGG
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43 ENSE00000450960 TGTCCTTCAGAACA
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44 ENSE00000789663 TGTTTCTTAGGTAG
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45 ENSE00000789664 ACCTCTGTAGGCAG
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46 ENSE00000789665 GTTCTTTTAGGACA
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47 ENSE00000789666 TTTTTAATAGGGAA
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48 ENSE00000450963 TCCCTGGCAGACTG
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49 ENSE00000813771 AACTTTTCAGCTCT
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50 ENSE00000813770 TATTACACAGGATT
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51 //
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52 splice5 5
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53 ENSE00000673410 ACTGGTGAGTCCTT
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54 ENSE00000673409 TGAGGTAAGCCTGA
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55 ENSE00000673408 TACGGTAAGTGGTA
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56 ENSE00000673407 TGAAGTAAGGTGCC
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57 ENSE00000401072 CCAAGTAAGTTTTT
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58 ENSE00000868868 TAAGGTGCGTTCAT
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59 ENSE00000401061 AAAAGTAAGTAAAT
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60 ENSE00000673400 AAACGTAAGTTGGA
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61 ENSE00000673402 TGAGGTATGTAAGA
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62 ENSE00000673403 TCAGGTATGACATT
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63 ENSE00000868865 CTATGTGAGTTATG
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64 ENSE00000662824 GTAAGTTATAAGAA
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65 ENSE00000662823 CCATGTAAGTGGTA
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66 ENSE00000662822 TTAGGTAGGTACTA
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67 ENSE00000662821 TCAGGTAGGTACAT
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68 ENSE00000662820 TCAGGTACAGTGAA
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69 ENSE00000662819 CGAGGTATGCAACT
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70 ENSE00000814444 CAGAGTAAGTAACC
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71 ENSE00000814445 AGAGGTAAGCCAGG
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72 ENSE00000814446 GATGGTAAGATGAT
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73 ENSE00000814447 CAGGGTGAGTTGGA
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74 ENSE00000814448 TCAGGTGAGGGCAT
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75 ENSE00000789672 TTAAGTAAGTTCAG
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76 ENSE00000789671 AAAGGTGAATGCTT
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77 ENSE00000814451 ACAGGTCAGAGGCC
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78 ENSE00000814452 GAAGGTAAGAATTA
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79 ENSE00000789668 TGAGGTGAGTACTT
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80 ENSE00000789652 TTAAGTAAGTTTGT
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81 ENSE00000789653 ACAGGTAAAATTTG
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82 ENSE00000789654 TAAGGTAAGGCTTT
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83 ENSE00000789655 ACAGGTAAGAAGAA
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84 ENSE00000789656 TTAGGTAAGCTTCA
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85 //
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86 # A G C T N
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87 intron_emission
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88 0.25 0.25 0.25 0.25 0.25
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89 //
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90 polyp_emission
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91 0.2 0.2 0.3 0.3 0.25
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92 //
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93 rnd_emission
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94 0.25 0.25 0.25 0.25 0.25
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95 //
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96 rndcodon
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97 AAA 5290.000000
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98 AAC 4795.000000
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99 AAG 8178.000000
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100 AAT 3305.000000
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101 ACA 6240.000000
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102 ACC 7728.000000
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103 ACG 3347.000000
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104 ACT 4930.000000
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105 AGA 8491.000000
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106 AGC 8639.000000
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107 AGG 8997.000000
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108 AGT 4417.000000
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109 ATA 1975.000000
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110 ATC 4973.000000
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111 ATG 6474.000000
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112 ATT 3083.000000
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113 CAA 7057.000000
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114 CAC 6815.000000
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115 CAG 11041.000000
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116 CAT 5779.000000
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117 CCA 10537.000000
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118 CCC 10307.000000
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119 CCG 5621.000000
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120 CCT 10134.000000
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121 CGA 3377.000000
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122 CGC 5146.000000
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123 CGG 5375.000000
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124 CGT 2765.000000
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125 CTA 3502.000000
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126 CTC 7465.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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127 CTG 13780.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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128 CTT 5453.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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129 GAA 7461.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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130 GAC 6937.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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131 GAG 9975.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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132 GAT 4949.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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133 GCA 7747.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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134 GCC 10890.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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135 GCG 4828.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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136 GCT 9371.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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137 GGA 10143.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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138 GGC 10400.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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139 GGG 8869.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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140 GGT 5567.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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141 GTA 2143.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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142 GTC 4593.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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143 GTG 8189.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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144 GTT 3021.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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145 TAA 1775.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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146 TAC 3687.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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147 TAG 1333.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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148 TAT 2477.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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149 TCA 6180.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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150 TCC 7668.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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151 TCG 2875.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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152 TCT 5767.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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153 TGA 7315.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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154 TGC 8625.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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155 TGG 11718.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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156 TGT 5197.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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157 TTA 1664.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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158 TTC 5462.000000
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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159 TTG 4420.000000
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160 TTT 3453.000000
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161 //
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