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annotate conf.cfg @ 2:be504ccbc41c draft default tip

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master branch Updating with tag :CI_COMMIT_TAG - - Fxx
author fgiacomoni
date Wed, 30 Nov 2022 16:14:27 +0000
parents 7c9269bded0e
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1 ## Conf file for downloader_bank_hmdb.pl script
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2 #
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3 ## Version
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4 VERSION=1.1
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5 ##v1.0 : Init
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6 ##V1.1 : calculating and adding [M+H]+ and [M-H]- mono isotopic mass in banks
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7 ##V1.1.1 : Links updating
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8 #
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9 ## ARGVT
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10 PROTON_MASS=1.007825
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11 ELECTRON_MASS=0.0005486
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12 #CHARGE=1
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13
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14 #LOCAL BANKS VERSIONNING
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15 LOCALBANK_PATH=banks
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16
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17 #HMDB archive url
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18 HMDB_URL=
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19 ## Sweat - added 22/11/28
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20 SWEAT_URL=https://hmdb.ca/system/downloads/current/sweat_metabolites.zip
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21 SWEAT_FILE_NAME=sweat_metabolites.xml
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22 SWEAT_HTTP_FORMAT=ZIP
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23 SWEAT_DB_FORMAT=XML
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24 ## Serum - updated 22/11/28
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25 SERUM_URL=https://hmdb.ca/system/downloads/current/serum_metabolites.zip
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26 SERUM_FILE_NAME=serum_metabolites.xml
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27 SERUM_HTTP_FORMAT=ZIP
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28 SERUM_DB_FORMAT=XML
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29 ## Urine - updated 22/11/28
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30 URINE_URL=https://hmdb.ca/system/downloads/current/urine_metabolites.zip
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31 URINE_FILE_NAME=urine_metabolites.xml
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32 URINE_HTTP_FORMAT=ZIP
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33 URINE_DB_FORMAT=XML
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34 ## Other matrices:
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35 ## CSF - updated 22/11/28
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36 CSF_URL=https://hmdb.ca/system/downloads/current/csf_metabolites.zip
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37 CSF_FILE_NAME=csf_metabolites.xml
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38 CSF_HTTP_FORMAT=ZIP
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39 CSF_DB_FORMAT=XML
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40 ##FECES - updated 22/11/28
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41 FECES_URL=https://hmdb.ca/system/downloads/current/feces_metabolites.zip
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42 FECES_FILE_NAME=feces_metabolites.xml
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43 FECES_HTTP_FORMAT=ZIP
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44 FECES_DB_FORMAT=XML
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45 ##SALIVA - updated 22/11/28
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46 SALIVA_URL=https://hmdb.ca/system/downloads/current/saliva_metabolites.zip
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47 SALIVA_FILE_NAME=saliva_metabolites.xml
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48 SALIVA_HTTP_FORMAT=ZIP
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49 SALIVA_DB_FORMAT=XML
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50 ##RUMEN - updated 22/11/28
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51 #RUMEN_URL=https://www.rumendb.ca/public/downloads/current/metabocards.gz
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52 #RUMEN_FILE_NAME=metabocards
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53 #RUMEN_HTTP_FORMAT=GZ
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54 #RUMEN_DB_FORMAT=CARD
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55 ##COW - updated 22/11/28
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56 COW_URL=https://www.bovinedb.ca/system/downloads/current/bmdb_metabolites.zip
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57 COW_FILE_NAME=bmdb_metabolites.xml
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58 COW_HTTP_FORMAT=ZIP
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59 COW_DB_FORMAT=XML
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60 ##MILK - updated 22/11/28
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61 MILK_URL=https://mcdb.ca/system/downloads/current/milk_metabolites.zip
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62 MILK_FILE_NAME=milk_metabolites.xml
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63 MILK_HTTP_FORMAT=ZIP
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64 MILK_DB_FORMAT=XML
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65 ##T3DB
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66 TOXIN_URL=http://www.t3db.ca/system/downloads/current/toxins.xml.zip
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67 TOXIN_FILE_NAME=toxins.xml
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68 TOXIN_HTTP_FORMAT=ZIP
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69 TOXIN_DB_FORMAT=XML