Mercurial > repos > iuc > package_numpy_1_9

annotate tool_dependencies.xml @ 5:842bb2f02723 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit bbfd77c34b609b86ef3a24525dae1127d8b3d99b
author iuc
date Mon, 02 May 2016 16:13:31 -0400
parents c8f7a7d73466
children 83d12e13dbbd
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="atlas" version="3.10.2">
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842bb2f02723 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit bbfd77c34b609b86ef3a24525dae1127d8b3d99b
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4 <repository changeset_revision="f27d2f8761ae" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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5 </package>
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c8f7a7d73466 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 2249d643284ee782d882cd200729a86a2c6bb744
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6 <package name="python" version="2.7">
c8f7a7d73466 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 2249d643284ee782d882cd200729a86a2c6bb744
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7 <repository changeset_revision="8b09fe018cac" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
c8f7a7d73466 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 2249d643284ee782d882cd200729a86a2c6bb744
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8 </package>
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9 <package name="numpy" version="1.9">
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10 <install version="1.0">
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11 <actions>
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12 <action sha256sum="9753003ab7c489968eb260e5460556fd7d533a8e11a9d5326e0995bd1aa21318" type="download_by_url">https://depot.galaxyproject.org/software/numpy/numpy_1.9p1_src_all.tar.gz</action>
842bb2f02723 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit bbfd77c34b609b86ef3a24525dae1127d8b3d99b
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13 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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14 <action type="set_environment_for_install">
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15 <repository changeset_revision="f27d2f8761ae" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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16 <package name="atlas" version="3.10.2" />
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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17 </repository>
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18 </action>
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842bb2f02723 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit bbfd77c34b609b86ef3a24525dae1127d8b3d99b
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19 <action type="shell_command">
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20 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
842bb2f02723 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit bbfd77c34b609b86ef3a24525dae1127d8b3d99b
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21 export ATLAS=$ATLAS_ROOT_PATH &amp;&amp;
842bb2f02723 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit bbfd77c34b609b86ef3a24525dae1127d8b3d99b
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22 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
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23 </action>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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24 <action type="set_environment">
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25 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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26 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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27 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
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28 <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable>
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29 <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable>
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30 <environment_variable action="set_to" name="NUMPY_ROOT_DIR">$INSTALL_DIR</environment_variable>
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31 </action>
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32 </actions>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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33 </install>
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34 <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme>
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35 </package>
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36 </tool_dependency>