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1 <tool id="bedGraphToBigWig" name="Convert a bed file to a BigWig" version="1.1">
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2 <description>Converting your ribosome profile bed file to a bigwig which is used for track creation on GWIPS-Viz</description>
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3 <command><![CDATA[
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4 $__tool_directory__/bedGraphToBigWig ${input1} ${input2} ${output1}
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5 ]]></command>
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6 <inputs>
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7 <param name="input1" type="data" format="bed" label="Bed File" />
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8 <param name="input2" type="data" format="tabular" label="Chromosome Sizes" help="Check out 'Get Chromosome Sizes' to fill this parameter"/>
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9 </inputs>
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10 <outputs>
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11 <data name="output1" format="bigwig"/>
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12 </outputs>
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13 <tests>
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14 <test>
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15 <param name="input1" value="test.bed" ftype="bed" />
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16 <param name="input2" value="test.chrom.sizes" ftype="tabular" />
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17 <output name="output1" file="test.bw" ftype="bigwig" lines_diff="4" />
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18 </test>
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19 </tests>
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20 <help>
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21
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22 </help>
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23 <citations/>
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24 </tool>
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