Mercurial > repos > lparsons > sam_stats
comparison test-data/testout.txt @ 0:b9e7569a4438 draft
Uploaded initial version with package dependency.
author | lparsons |
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date | Fri, 27 Jun 2014 15:36:01 -0400 |
parents | |
children | da985dad64c0 |
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-1:000000000000 | 0:b9e7569a4438 |
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1 reads 100 | |
2 version 1.32 | |
3 mapped reads 11 | |
4 mapped bases 377 | |
5 phred 33 | |
6 forward 0 | |
7 reverse 11 | |
8 len max 48 | |
9 len mean 34.2727 | |
10 len stdev 9.4137 | |
11 mapq mean 255.0000 | |
12 mapq stdev 0.0000 | |
13 mapq Q1 255.00 | |
14 mapq median 255.00 | |
15 mapq Q3 255.00 | |
16 snp rate 0.000000 | |
17 pct mismatch 0.0000 | |
18 base qual mean 31.5650 | |
19 base qual stdev 3.2627 | |
20 %A 27.5862 | |
21 %C 34.4828 | |
22 %G 16.7109 | |
23 %T 21.2202 | |
24 %PCRPRIMER1 8.753316 | |
25 %PCRPRIMER1+1 45.358090 | |
26 %PCRPRIMER1+2 9.814324 | |
27 %PCRPRIMER2+1 36.074271 | |
28 num ref seqs 4 | |
29 num ref aligned 4 |