Mercurial > repos > lparsons > sam_stats

comparison test-data/testout.txt @ 0:b9e7569a4438 draft

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Uploaded initial version with package dependency.
author lparsons
date Fri, 27 Jun 2014 15:36:01 -0400
parents
children da985dad64c0
comparison
equal deleted inserted replaced
-1:000000000000 0:b9e7569a4438
1 reads 100
2 version 1.32
3 mapped reads 11
4 mapped bases 377
5 phred 33
6 forward 0
7 reverse 11
8 len max 48
9 len mean 34.2727
10 len stdev 9.4137
11 mapq mean 255.0000
12 mapq stdev 0.0000
13 mapq Q1 255.00
14 mapq median 255.00
15 mapq Q3 255.00
16 snp rate 0.000000
17 pct mismatch 0.0000
18 base qual mean 31.5650
19 base qual stdev 3.2627
20 %A 27.5862
21 %C 34.4828
22 %G 16.7109
23 %T 21.2202
24 %PCRPRIMER1 8.753316
25 %PCRPRIMER1+1 45.358090
26 %PCRPRIMER1+2 9.814324
27 %PCRPRIMER2+1 36.074271
28 num ref seqs 4
29 num ref aligned 4