Mercurial > repos > lparsons > sam_stats

diff test-data/testout.txt @ 0:b9e7569a4438 draft

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Uploaded initial version with package dependency.
author lparsons
date Fri, 27 Jun 2014 15:36:01 -0400
parents
children da985dad64c0
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/testout.txt	Fri Jun 27 15:36:01 2014 -0400
@@ -0,0 +1,29 @@
+reads	100
+version	1.32
+mapped reads	11
+mapped bases	377
+phred	33
+forward	0
+reverse	11
+len max	48
+len mean	34.2727
+len stdev	9.4137
+mapq mean	255.0000
+mapq stdev	0.0000
+mapq Q1	255.00
+mapq median	255.00
+mapq Q3	255.00
+snp rate	0.000000
+pct mismatch	0.0000
+base qual mean	31.5650
+base qual stdev	3.2627
+%A	27.5862
+%C	34.4828
+%G	16.7109
+%T	21.2202
+%PCRPRIMER1	8.753316
+%PCRPRIMER1+1	45.358090
+%PCRPRIMER1+2	9.814324
+%PCRPRIMER2+1	36.074271
+num ref seqs	4
+num ref aligned	4