Mercurial > repos > lparsons > sam_stats

annotate test-data/testout.txt @ 0:b9e7569a4438 draft

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Uploaded initial version with package dependency.
author lparsons
date Fri, 27 Jun 2014 15:36:01 -0400
parents
children da985dad64c0
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b9e7569a4438 Uploaded initial version with package dependency.
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1 reads 100
b9e7569a4438 Uploaded initial version with package dependency.
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2 version 1.32
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3 mapped reads 11
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4 mapped bases 377
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5 phred 33
b9e7569a4438 Uploaded initial version with package dependency.
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6 forward 0
b9e7569a4438 Uploaded initial version with package dependency.
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7 reverse 11
b9e7569a4438 Uploaded initial version with package dependency.
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8 len max 48
b9e7569a4438 Uploaded initial version with package dependency.
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9 len mean 34.2727
b9e7569a4438 Uploaded initial version with package dependency.
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10 len stdev 9.4137
b9e7569a4438 Uploaded initial version with package dependency.
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11 mapq mean 255.0000
b9e7569a4438 Uploaded initial version with package dependency.
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12 mapq stdev 0.0000
b9e7569a4438 Uploaded initial version with package dependency.
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13 mapq Q1 255.00
b9e7569a4438 Uploaded initial version with package dependency.
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14 mapq median 255.00
b9e7569a4438 Uploaded initial version with package dependency.
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15 mapq Q3 255.00
b9e7569a4438 Uploaded initial version with package dependency.
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16 snp rate 0.000000
b9e7569a4438 Uploaded initial version with package dependency.
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17 pct mismatch 0.0000
b9e7569a4438 Uploaded initial version with package dependency.
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18 base qual mean 31.5650
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19 base qual stdev 3.2627
b9e7569a4438 Uploaded initial version with package dependency.
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20 %A 27.5862
b9e7569a4438 Uploaded initial version with package dependency.
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21 %C 34.4828
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22 %G 16.7109
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23 %T 21.2202
b9e7569a4438 Uploaded initial version with package dependency.
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24 %PCRPRIMER1 8.753316
b9e7569a4438 Uploaded initial version with package dependency.
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25 %PCRPRIMER1+1 45.358090
b9e7569a4438 Uploaded initial version with package dependency.
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26 %PCRPRIMER1+2 9.814324
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27 %PCRPRIMER2+1 36.074271
b9e7569a4438 Uploaded initial version with package dependency.
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28 num ref seqs 4
b9e7569a4438 Uploaded initial version with package dependency.
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29 num ref aligned 4